Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0461
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   2.8  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           20   6.5  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    20   8.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    20   8.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 226 SLDEKRYHEAEIARV 270
           SLDEK+Y   E+ RV
Sbjct: 334 SLDEKKYILQEVVRV 348


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 218 IPCSMCSASEMSPRPSCS 165
           +P   CS +  SP PS S
Sbjct: 191 LPTPTCSEASSSPTPSHS 208


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -2

Query: 80  ITRANARRPFILPFDDSF 27
           ITRA+++    +PF+ +F
Sbjct: 541 ITRASSQSSVTIPFERTF 558


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
          transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 85 PRSLGPTQEDPSSC 44
          P+  G  Q DP SC
Sbjct: 37 PQGGGAVQPDPGSC 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.311    0.126    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,245
Number of Sequences: 336
Number of extensions: 1186
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)