Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0461
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845 30 0.60
03_02_0520 + 9092020-9092079,9092253-9093047 29 1.4
04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431 28 1.8
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 2.4
06_01_0985 - 7646772-7647451,7647957-7648107 28 2.4
05_06_0246 + 26656629-26656907,26657001-26657228,26657595-266576... 28 2.4
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307... 27 3.2
05_01_0185 + 1305006-1305218 27 3.2
05_01_0181 - 1280296-1280508 27 3.2
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 27 3.2
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 27 4.2
02_04_0060 - 19345316-19345453,19345718-19345849,19345937-193460... 27 4.2
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724... 27 5.6
08_01_0264 - 2142856-2143152,2143667-2143829,2143915-2143992,214... 27 5.6
03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636 27 5.6
07_03_0908 + 22507565-22507810,22507925-22508872,22509314-225103... 26 9.8
01_01_0321 - 2584332-2584661,2584776-2584883,2584987-2585070,258... 26 9.8
>03_06_0537 + 34585339-34585581,34585668-34585862,34585964-34586845
Length = 439
Score = 29.9 bits (64), Expect = 0.60
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Frame = -1
Query: 300 FIRDLVXKVVNSGY--FCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSRGADPA 127
F+ D + SG+ + LM+ ALR +V F L R W FS G P
Sbjct: 9 FVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPL 68
Query: 126 VPTP 115
+P
Sbjct: 69 QSSP 72
>03_02_0520 + 9092020-9092079,9092253-9093047
Length = 284
Score = 28.7 bits (61), Expect = 1.4
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = -1
Query: 213 VLDVFSLRDVPAAELLRRWTFSSR 142
VLD+ +++ +PA +L+RWT +R
Sbjct: 138 VLDLMNIKSLPAQYILKRWTREAR 161
>04_01_0423 - 5597068-5597109,5597181-5597309,5597490-5598431
Length = 370
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -1
Query: 276 VVNSGYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 142
+ + G F + L AL+ VLD+ ++ +PA +L+RWT +R
Sbjct: 177 ICSCGQFNRIGILCGHALK--VLDLMNIESLPAQYILKRWTREAR 219
>12_01_0797 +
7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 264 GYFCLMVSLLVQALRHSVLDVFSLRDVPAAELLRRWTFSSR 142
G F L AL+ VLD+ +++ +P+ +L+RWT +R
Sbjct: 484 GMFSRTGILCAHALK--VLDLMNIKSLPSQYVLKRWTRGAR 522
>06_01_0985 - 7646772-7647451,7647957-7648107
Length = 276
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 213 VLDVFSLRDVPAAELLRRWTFSSR 142
VLDV +++ +P +L+RWT +R
Sbjct: 240 VLDVMNIKSLPKRYILKRWTREAR 263
>05_06_0246 +
26656629-26656907,26657001-26657228,26657595-26657630,
26658362-26658475,26658562-26659167
Length = 420
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 236 SSKLSDIPCSMCSASEMSPRPSCSDVG 156
S+ SD PC + SAS S P+ SD G
Sbjct: 310 SASSSDFPCDVSSASTSSATPARSDGG 336
>05_05_0203 -
23229538-23229720,23229808-23230007,23230087-23230718,
23231493-23231844,23231926-23232136,23232413-23232472
Length = 545
Score = 27.5 bits (58), Expect = 3.2
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -1
Query: 213 VLDVFSLRDVPAAELLRRWTFSSR 142
+LDV +++ VP +L+RWT ++
Sbjct: 319 ILDVNNIKSVPQQYILKRWTIDAK 342
>05_01_0185 + 1305006-1305218
Length = 70
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 141 GADPAVPTPHTTSVGGAND 85
GADP V +PH GG D
Sbjct: 3 GADPTVSSPHARGFGGGGD 21
>05_01_0181 - 1280296-1280508
Length = 70
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 141 GADPAVPTPHTTSVGGAND 85
GADP V +PH GG D
Sbjct: 3 GADPTVSSPHARGFGGGGD 21
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 27.5 bits (58), Expect = 3.2
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = -1
Query: 213 VLDVFSLRDVPAAELLRRWTFSSR 142
+LDV +++++P +L+RWT ++
Sbjct: 365 ILDVNNIKEIPKQYILQRWTIDAK 388
>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 27.1 bits (57), Expect = 4.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 216 SVLDVFSLRDVPAAELLRRWTFSSRGADPA 127
SVL L +P+ + RRWT ++ A P+
Sbjct: 1018 SVLSYLQLEAIPSFCIARRWTMQAKSAFPS 1047
>02_04_0060 -
19345316-19345453,19345718-19345849,19345937-19346005,
19346453-19346551,19346702-19346786,19346890-19346990,
19347294-19347362,19347635-19347675,19348343-19348458,
19348546-19348702,19349266-19349474,19349811-19349914,
19350234-19350381,19350463-19350761,19350844-19351377
Length = 766
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 163 SEQLGRGDISEAEHIEHGMSESLDEKR 243
+E L RG + H +HG E+LDEKR
Sbjct: 588 TEYLSRGSLYRILH-KHGARENLDEKR 613
>09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,
7246502-7246522
Length = 1012
Score = 26.6 bits (56), Expect = 5.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 168 LRRWTFSSRGADPAVPTPHTTSVGGANDRDH*GQRKKTL 52
LR+ T S+ A PA+P+ TS + DH G +K L
Sbjct: 950 LRQHTSSALQAQPALPSGPQTSQQPSAQEDHHGDPQKRL 988
>08_01_0264 -
2142856-2143152,2143667-2143829,2143915-2143992,
2144097-2144162,2144941-2145098
Length = 253
Score = 26.6 bits (56), Expect = 5.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 248 WYRFSSKLSDIPCSMCSASEMSPRPSCSD 162
W+ L D+P + C A PSCS+
Sbjct: 23 WFLDCGILEDLPAAACGAFPWDASPSCSN 51
>03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636
Length = 369
Score = 26.6 bits (56), Expect = 5.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3
Query: 145 SWCGSCGAYAA 113
+WCG CGAY A
Sbjct: 11 AWCGGCGAYLA 21
>07_03_0908 +
22507565-22507810,22507925-22508872,22509314-22510337,
22510425-22510477
Length = 756
Score = 25.8 bits (54), Expect = 9.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 213 VLDVFSLRDVPAAELLRRWTFSSRGADP 130
VLD +++D+P L+RW ++ P
Sbjct: 611 VLDTRNIKDLPPQYFLKRWRKDAKSGSP 638
>01_01_0321 -
2584332-2584661,2584776-2584883,2584987-2585070,
2585162-2585221,2585322-2585421,2585504-2585906,
2586183-2586480,2587526-2587711
Length = 522
Score = 25.8 bits (54), Expect = 9.8
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 222 RHSVLDVFSLRDVPAAELLRRWTFSSRGADPAVPTPHTTSVGGANDR 82
RHS+ + R++ AELL R G+D A+ SVG + +
Sbjct: 117 RHSICSLGGRRELQGAELLPR--LPCPGSDEALECESKASVGSVSSK 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.126 0.369
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,121,815
Number of Sequences: 37544
Number of extensions: 158003
Number of successful extensions: 343
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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