Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0461
         (354 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)                     27   4.4  
SB_53665| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.7  

>SB_28668| Best HMM Match : UCH (HMM E-Value=8e-12)
          Length = 893

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 144 RGADPAVPTPHTTSVG 97
           R A+P++PTPHT   G
Sbjct: 574 RSAEPSIPTPHTMQQG 589


>SB_53665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 189 DVPAAELLRRWTFSSRGADPAVPTP 115
           +V  AE LRRWT +  G+  A P P
Sbjct: 8   NVAVAEWLRRWTRNPMGSSRAGPNP 32


>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 247 GIASRPSSQTFRARCVQPPRCPRGRAAPT 161
           G+ SR  S T RAR   PP  P+  A+P+
Sbjct: 519 GVPSRVGSATSRARQQPPPPPPQRPASPS 547


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.126    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,817,514
Number of Sequences: 59808
Number of extensions: 163015
Number of successful extensions: 364
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 548040812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)