Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0461
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    26   8.7  

>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
           protein K02F3.6 protein.
          Length = 404

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 251 SWYRFSSKLSDIPCSMCSASEMSPRPSC 168
           SWY F  +   IP  +CSA +M     C
Sbjct: 260 SWYMFFYQNEKIPEMLCSADDMKMLELC 287


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 253 PHGIASRPSSQTFRARCVQPPRCPRGRAAPTLDVQ*SWCGSCGA 122
           P+G A  P + T +A  V PP  P+    P  D++ SW  +  A
Sbjct: 91  PNGAAEPPQTPTNQAPAVPPPPPPQ----PANDLRPSWLVAANA 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.126    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,006,312
Number of Sequences: 27780
Number of extensions: 110641
Number of successful extensions: 226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)