Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0461
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   3.3  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    20   9.9  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      20   9.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 199 QPPRCPRGR 173
           QPP+CPR R
Sbjct: 564 QPPQCPRFR 572


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 196 PPRCPRG 176
           PPRCP G
Sbjct: 58  PPRCPPG 64


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 196 PPRCPRG 176
           PPRCP G
Sbjct: 58  PPRCPPG 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.126    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,490
Number of Sequences: 438
Number of extensions: 1190
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)