Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0461
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    29   0.67 
At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domai...    27   3.6  
At1g48650.1 68414.m05445 helicase domain-containing protein cont...    27   4.7  

>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 72  PSDRGHLHRRR*SYAA*APQDPHHDY*TSNVGAARPRG 185
           PS   H H RR + AA A Q PHH   T+  G     G
Sbjct: 107 PSPDNHRHHRRTTTAAVAGQPPHHRRTTAAAGTTTIAG 144


>At4g31390.1 68417.m04452 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 682

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 225 LRHSVLDVFS--LRDVPAAELLRRWTFSSRGADPAVPTPHTTSVGGANDRD 79
           + H+VL+     LR + A EL R  TFS+        T   T VGG N  D
Sbjct: 23  INHAVLNRRDALLRSLNAVELRRSRTFSAVRTSNFSVTAAATDVGGRNSTD 73


>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 89  MTAITRANARRPFILPFDDSFLCEAGGNR 3
           MT +   + R PF++PFD   L E   ++
Sbjct: 810 MTVVAGLSVRDPFLMPFDKKDLAETARSK 838


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.126    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,711,824
Number of Sequences: 28952
Number of extensions: 104683
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)