Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0460
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    25   2.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.0  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    25   3.0  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    24   5.3  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    24   7.0  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   7.0  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    23   9.2  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    23   9.2  

>SPBC4C3.07 |||translation initiation factor
          eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 96 TSSSPRHSPPTGLIEPLVLFPLFTH 22
          T  S R SP   +IEP VLF +  H
Sbjct: 12 TKPSSRSSPLNIVIEPAVLFSILDH 36


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +2

Query: 197 VAEREEFRTITCYYLSLLLPRKY 265
           +++ E+   +TC Y+S+ +P K+
Sbjct: 844 LSDLEKLHQVTCSYISIRIPHKF 866


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 221 CEILPAPRLDL*HVNSSRNH 162
           C  LP+  +D  H NSS+NH
Sbjct: 271 CNKLPSIMIDCSHGNSSKNH 290


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 270 SLARTDAMTTVLRDCKPFT*H 332
           S+   DA+  VLR C+P+  H
Sbjct: 299 SICEIDALECVLRSCQPWVQH 319


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 119 IRKHYSVMSVYLKCGDYVMN 178
           ++KH S   +YLK  DY+++
Sbjct: 403 LKKHLSSFQIYLKPKDYLLD 422


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 260  KYKESRSHRCNDHRPQG 310
            K +E+  HR  +HRP G
Sbjct: 1361 KKREAEIHRLKEHRPSG 1377


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 152 LKCGDYVMNLRVTSPVAEREEFRTITCYYLSLLLPRKYKESRSHRC 289
           ++C D V  LR  S  A    +R  T +YLS  + +    +   +C
Sbjct: 224 IQCLDIVALLRAFSLFAHHYSYRCNTWFYLSKHMKKVASANMDAQC 269


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 131 YSVMSVYLKCGDYVMNLRVTSPVAEREEFRTITCYYLSLLLPRKYKE 271
           Y   S  LK G+Y  +    SP  ER+  R    +    L+ + YKE
Sbjct: 515 YLTKSSCLKIGNYAFS----SPYIERQTNRGAVSHVPDWLIEKNYKE 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,910
Number of Sequences: 5004
Number of extensions: 24918
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)