Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0460
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0216 + 20986231-20988021                                         27   2.8  
10_08_0847 + 21006842-21007042,21007173-21007261,21012226-210124...    27   4.9  
10_07_0112 - 12986547-12988502                                         26   8.5  

>02_04_0216 + 20986231-20988021
          Length = 596

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +2

Query: 50  GSISPVGGECRGEEDVSMLMM-------MNIRKHYSVMSVYLKCGDYVMNLRVTSPVAER 208
           G+ + VG   RG+E    ++         N+  H +++ +Y KCGD V  + V   + ER
Sbjct: 310 GACAKVGLVARGKEVHGFILRRSIGSDPFNVFIHNALIDMYSKCGDMVAAMAVFDRMLER 369

Query: 209 E 211
           +
Sbjct: 370 D 370


>10_08_0847 +
           21006842-21007042,21007173-21007261,21012226-21012429,
           21016334-21016568,21016760-21016952,21017472-21017503,
           21019172-21019236,21020766-21020985,21021172-21021370,
           21021728-21021768,21023366-21023404,21023699-21023734,
           21023767-21023798,21024264-21024426,21024602-21024653,
           21024699-21024794,21024911-21025023,21026536-21026615,
           21027343-21027577,21027765-21027890,21027994-21028092
          Length = 849

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +2

Query: 11  TYIQCVNSGNRTSGSISPVGGECRGEEDVSMLMMMNIRKHYSVMSVYLKCGDYVMNLRVT 190
           T  +C N    T GS+SPV  + R E  +S  + +++ +    ++ +  C D    LR  
Sbjct: 482 TLERCYNIVMYTVGSLSPVSVQKRKERAIS--IDLDVYQVKDCIARFRDCEDEFNKLRDA 539

Query: 191 SPVAEREEFRTIT 229
              A +   R +T
Sbjct: 540 FVAASKRHMRPLT 552


>10_07_0112 - 12986547-12988502
          Length = 651

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 119 IRKHYSVMSVYLKCGDYVMNLRVTSPVAEREEFRTITCY 235
           +R   ++M +Y+KCG    +L +   V ER E RT+  +
Sbjct: 263 VRLMNALMDMYIKCG----SLEMAKSVFERIEHRTVVSW 297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,098,700
Number of Sequences: 37544
Number of extensions: 170225
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)