Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0460
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51716| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.2  
SB_10452| Best HMM Match : TP2 (HMM E-Value=9.5)                       28   2.2  
SB_43675| Best HMM Match : K_tetra (HMM E-Value=0)                     27   2.9  
SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)                    27   5.0  
SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.6  
SB_56286| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.8  
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 26   8.8  
SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08)                  26   8.8  
SB_20458| Best HMM Match : LicD (HMM E-Value=2.9e-07)                  26   8.8  

>SB_51716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 53  SISPVGGECRGE-EDVSMLMMMNIRKHYSVMSVYLKCGDYVMNLRVTSPVA 202
           +++ + GE R   E+ S+ + + +R++  V+S YLK  + V   R   PVA
Sbjct: 36  AMARLDGEMRSILENTSLPLDVKVRRYEQVLSQYLKWMEQVKPTRAPRPVA 86


>SB_10452| Best HMM Match : TP2 (HMM E-Value=9.5)
          Length = 177

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 53  SISPVGGECRGE-EDVSMLMMMNIRKHYSVMSVYLKCGDYVMNLRVTSPVA 202
           +++ + GE R   E+ S+ + + +R++  V+S YLK  + V   R   PVA
Sbjct: 36  AMARLDGEMRSILENTSLPLDVKVRRYEQVLSQYLKWMEQVKPTRAPRPVA 86


>SB_43675| Best HMM Match : K_tetra (HMM E-Value=0)
          Length = 794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 152 LKCGDYVMNLRVTSPVAEREEFRTITCYYLSLLLPRKYKESRSH 283
           L C  +  N R+ +    R   R +  Y L+  L +KYK +RSH
Sbjct: 208 LACSQFSANARMLAHFFRRA--RIVFLYLLAARLFKKYKNARSH 249


>SB_28088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 906

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 246 CYSRVNIRSLARTDAMTTVLRDCKPFT 326
           CY + N+ S+ + DAM T+  D   F+
Sbjct: 724 CYIKGNLNSIGQRDAMVTLREDVDEFS 750


>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
          Length = 289

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 166 LRDEFTCYKSSRGAGRISHDNLLLPVFVTPA*I*GV-SLAQM 288
           LRD+ +CYK     G   HD +++ +FV    + G+  L QM
Sbjct: 195 LRDKKSCYKYCINYGCKWHDGMMIDMFVIDGKLDGIFPLKQM 236


>SB_24714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 158 CGDYVMNLRVTSPVAEREEFRTITCYYLSLLLPRKYKESRSHRC 289
           CG+ ++  ++   V +   FR ITC Y    +P +       +C
Sbjct: 40  CGEIMLRFQLAKHVEKECPFRLITCVYCQNDVPERTLIEHLKKC 83


>SB_56286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 LRDEFTCYKSSRGAGRISHDNLLLPVFV 249
           LRD  +CYK     G   HD +++ +FV
Sbjct: 269 LRDRHSCYKYCIKHGCGWHDGMMIDIFV 296


>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 77  CRGEEDVSMLMMMNIRKHYSVMSVYLKCGDYVMNLRVTSPVAEREEFRTITCYYLSLLLP 256
           C+G ED+S ++     K  +   + + CG Y+++    + + E      ITC+  S    
Sbjct: 23  CQGNEDISTMLRTLSLKELNPHIICVLCGGYLVD---ATTIIECLHSWQITCFRTS--CT 77

Query: 257 RKYKESRSHR 286
           + Y+E  S R
Sbjct: 78  KLYRECISVR 87


>SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08)
          Length = 362

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 LRDEFTCYKSSRGAGRISHDNLLLPVFV 249
           LRD  +CYK     G   HD L++ ++V
Sbjct: 266 LRDRNSCYKYCLAHGCTWHDGLMVDMYV 293


>SB_20458| Best HMM Match : LicD (HMM E-Value=2.9e-07)
          Length = 375

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 166 LRDEFTCYKSSRGAGRISHDNLLLPVFV 249
           LRD  +CYK     G   HD +++ +FV
Sbjct: 269 LRDRHSCYKYCIKHGCGWHDGMMIDIFV 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,562,148
Number of Sequences: 59808
Number of extensions: 195864
Number of successful extensions: 432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)