Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0460
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical p...    25   10.0 
Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical p...    25   10.0 
U40411-3|AAC47066.2|  270|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical...    25   10.0 
AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.     25   10.0 
AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.     25   10.0 
AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
            E01G6.1 protein.
          Length = 1391

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 302  DGGHCICASETPYIYAG 252
            D G+CIC ++ P ++ G
Sbjct: 1227 DNGYCICPTDKPLVHGG 1243


>Z11115-14|CAC42391.1|  644|Caenorhabditis elegans Hypothetical
           protein ZK637.7b protein.
          Length = 644

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 89  EDVSMLMMMNIRKHYSVMSVYLKCGDYVM 175
           EDVS  M  NI+K Y+++  Y K   +VM
Sbjct: 195 EDVSTFMRANIKKLYNLLR-YKKARQWVM 222


>Z11115-13|CAA77454.2|  642|Caenorhabditis elegans Hypothetical
           protein ZK637.7a protein.
          Length = 642

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 89  EDVSMLMMMNIRKHYSVMSVYLKCGDYVM 175
           EDVS  M  NI+K Y+++  Y K   +VM
Sbjct: 193 EDVSTFMRANIKKLYNLLR-YKKARQWVM 220


>U40411-3|AAC47066.2|  270|Caenorhabditis elegans Hypothetical
           protein B0403.3 protein.
          Length = 270

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 125 KHYSVMSVYLKCGDYVMN-LRVTSPVAEREEFRTITCYYLSLLLPRKYKE 271
           KH +V++ Y  C +Y+++ + + S VA R     +  YY S  L R+Y E
Sbjct: 172 KHCNVIACYQLCHEYIISKVCIDSAVAARS---VVKSYYDS-YLEREYTE 217


>AL032654-10|CAB63391.1|  819|Caenorhabditis elegans Hypothetical
           protein Y52B11A.10 protein.
          Length = 819

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 332 VSGKRFTIPEDGGHCICASETPYIYAGVTKTGN 234
           + G  F +PE GG+ + AS +    AG  KTG+
Sbjct: 581 IIGSAFRLPEQGGYGLLASASA---AGQKKTGS 610


>AF269694-1|AAF76193.1|  642|Caenorhabditis elegans LIN-9S protein.
          Length = 642

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 89  EDVSMLMMMNIRKHYSVMSVYLKCGDYVM 175
           EDVS  M  NI+K Y+++  Y K   +VM
Sbjct: 193 EDVSTFMRANIKKLYNLLR-YKKARQWVM 220


>AF269693-1|AAF76192.1|  644|Caenorhabditis elegans LIN-9L protein.
          Length = 644

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 89  EDVSMLMMMNIRKHYSVMSVYLKCGDYVM 175
           EDVS  M  NI+K Y+++  Y K   +VM
Sbjct: 195 EDVSTFMRANIKKLYNLLR-YKKARQWVM 222


>AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical
           protein Y67D2.4 protein.
          Length = 313

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 176 NLRVTSPVAEREEFRTITCYYLSLLLPRKYKES 274
           + R+   + ER +F     Y++ L   RK+K+S
Sbjct: 270 DFRIQQSIGERWDFDRAAKYFIQLYRNRKFKDS 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,762,171
Number of Sequences: 27780
Number of extensions: 146391
Number of successful extensions: 297
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)