Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0460
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   3.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   3.0  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.8  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   9.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    20   9.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    20   9.1  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 CYYLSLLLPRKYK 268
           C YL++ +P+KY+
Sbjct: 126 CLYLNIWVPQKYR 138


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 CYYLSLLLPRKYK 268
           C YL++ +P+KY+
Sbjct: 126 CLYLNIWVPQKYR 138


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 197 VAEREEFRTITCYYLSLLLPRKYKESRSHRCN 292
           VA+ EE          + LP+  K +R HR N
Sbjct: 345 VAQNEETLQTVVAMKMMHLPQSNKMNRMHRMN 376


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 5   PITYIQCVNSGNRT 46
           P  +++CV SGN T
Sbjct: 409 PSMFLKCVASGNPT 422


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 239 GNNRLSCEILPAPRL 195
           G++ L+C I+  PRL
Sbjct: 192 GSSALACAIMLGPRL 206


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 190 KSSRGAGRISHDNL 231
           K +R  GR+S DN+
Sbjct: 244 KRTRAEGRLSSDNM 257


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 217 SHDNLLLPVFVTP 255
           SH+NLL  V+ TP
Sbjct: 400 SHNNLLNNVYSTP 412


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 170 VMNLRVTSPVAEREEFRTITCYYLSL 247
           V+   +T P   R   R I C Y++L
Sbjct: 197 VLATSLTEPYTLRNYGRRINCTYVAL 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,416
Number of Sequences: 438
Number of extensions: 1749
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)