Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0460
         (333 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02730.1 68417.m00372 transducin family protein / WD-40 repea...    27   4.1  
At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p...    27   4.1  
At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase, p...    27   4.1  
At1g15530.1 68414.m01868 receptor lectin kinase, putative simila...    27   4.1  
At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO) ident...    26   5.5  
At4g19865.1 68417.m02911 kelch repeat-containing F-box family pr...    26   5.5  
At1g30750.1 68414.m03758 expressed protein                             26   5.5  
At5g04045.1 68418.m00385 Expressed protein                             26   7.2  
At4g27750.1 68417.m03987 expressed protein                             26   7.2  
At1g05205.1 68414.m00525 expressed protein                             26   7.2  

>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
           family protein similar to C. elegans putative WD-repeat
           protein C14B1.4 (SP:Q17963)
          Length = 333

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 106 NDDEH*ETLFGDECIFKMW*LRDEFTCYKSSRG 204
           + D H      D+C  ++W  R  + C K  RG
Sbjct: 94  SSDSHYTCSASDDCTLRIWDARSPYECLKVLRG 126


>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           [Zea mays] GI:5669871; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 139 DECIFKMW*LRDEFTCYKSSRGAGRISHDNLLL 237
           D C+ KM  LR +   ++ + G  RIS ++L++
Sbjct: 340 DTCVDKMMGLRSQLNSFQEASGGKRISVNDLVI 372


>At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           GI:5669871 [Zea mays]; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 139 DECIFKMW*LRDEFTCYKSSRGAGRISHDNLLL 237
           D C+ K+  LR +   +K + G  RIS ++L++
Sbjct: 340 DTCVDKLMALRSQLNSFKEASGGKRISVNDLVV 372


>At1g15530.1 68414.m01868 receptor lectin kinase, putative similar
           to receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains pfam domains PF00139:
           Legume lectins beta domain and PF00069: Protein kinase
           domain
          Length = 656

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 43  NQWFYKSCGGRMPGRRRRVDVND 111
           NQW + +    MP RRRR  +ND
Sbjct: 443 NQWIFDNPKEPMPWRRRRQVIND 465


>At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO)
           identical to Zinc finger protein CONSTANS SP:Q39057 from
           [Arabidopsis thaliana]
          Length = 373

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 149 YLKCGDY--VMNLRVTSPVAEREEFRTI--TCYYLSLLLPRKYKESRSHRCNDHR 301
           YL   DY   M+ + T   ++ ++  ++  T Y    ++P K +ESR H+C++ +
Sbjct: 176 YLNLVDYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLKLEESRGHQCHNQQ 230


>At4g19865.1 68417.m02911 kelch repeat-containing F-box family
          protein contains F-box domain Pfam:PF00646 and Kelch
          motif Pfam:PF01344
          Length = 393

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -1

Query: 93 SSSPRHSPPTGLIEPLVLFP--LFTHCI 16
          +SSP HSPP+     L L P  +  HC+
Sbjct: 15 NSSPPHSPPSSSSPSLSLLPEEIVVHCL 42


>At1g30750.1 68414.m03758 expressed protein
          Length = 212

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 111 IINIDTSSSPRHSPPTGLIEPLVLF 37
           I+   +SSSP + P TGL +PL+ F
Sbjct: 51  ILGQPSSSSPVNQPLTGLSQPLIGF 75


>At5g04045.1 68418.m00385 Expressed protein
          Length = 97

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  TYIQCVNSGNRTSGSISPVGGECRGEEDVSM 103
           T++ C      T    SP+GG+C G ED  +
Sbjct: 43  THVICNEHHICTCAHGSPIGGQCDGVEDCDL 73


>At4g27750.1 68417.m03987 expressed protein 
          Length = 305

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 71  GECRGEEDVSMLMMMNIRKHYSVMSVYLKCGDYVMNL 181
           G C G E+V+MLM    R   +  ++ L+CG++++ L
Sbjct: 209 GACNGIEEVAMLM----RDKQADENLRLRCGEFLLLL 241


>At1g05205.1 68414.m00525 expressed protein
          Length = 91

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 251 LPRKYKESRSHRCND 295
           LP  ++E ++HRCND
Sbjct: 16  LPEGHREPKAHRCND 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,306,819
Number of Sequences: 28952
Number of extensions: 135444
Number of successful extensions: 321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)