Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0459
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    36   0.004
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   1.1  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    27   2.0  

>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 461 DIYSXXXXXXXXLQPFGTEAERAACLTRVRDQVYPDSFEDKYPKEMEHLSAFLQN 297
           DIY+        L PF T  ERA+ +  ++  ++P  F D  P+E   + + L +
Sbjct: 593 DIYALGILFFELLYPFNTRMERASAIANLKKGIFPHDFLDSMPEEASLIRSMLSS 647


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -3

Query: 473 SYKVDIYSXXXXXXXXLQPFGTEAERAACLTRVRDQVYPDSFEDKYPKEMEH 318
           S  +D ++         +P  T+  R++   R  D  +PDS  D Y  + EH
Sbjct: 295 SINLDNFNRPSQQEDYDKPKNTQVSRSSNHHRRYDSYHPDSRSDSYRSKREH 346


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 476 YSYKVDIYSXXXXXXXXLQPFGTEAERAACLTRVRDQVYPDSFEDKY 336
           ++ K+D +S        L PF T  ERA  L  +R    P+ F +++
Sbjct: 511 FTKKIDTFSLGMVLFELLHPFQTNMERATKLQDLRRGNLPEEFVEQH 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,806
Number of Sequences: 5004
Number of extensions: 28757
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)