Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0459
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 31 0.64
12_01_0117 + 893924-893971,894944-895003,895024-895174,895410-89... 29 2.0
04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608... 24 3.1
10_08_0427 + 17828007-17828570,17829788-17829904,17830319-178303... 28 4.5
07_01_0713 - 5438005-5438294,5438441-5438567,5438638-5438687,543... 28 4.5
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 28 4.5
02_02_0489 + 10869482-10871218 28 4.5
01_04_0130 + 16462428-16463210,16463644-16463796,16464707-164647... 28 4.5
11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989 27 6.0
10_01_0318 + 3493913-3496976,3497064-3497392 27 6.0
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142... 27 6.0
10_08_0531 + 18576913-18578058,18578724-18578843,18578924-185789... 27 7.9
08_02_1243 - 25527523-25527960,25527993-25528604 27 7.9
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 27 7.9
>08_01_0087 +
630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 30.7 bits (66), Expect = 0.64
Identities = 18/59 (30%), Positives = 34/59 (57%)
Frame = +1
Query: 100 KKRRKKKEDVEGDSEESAAVRDSKLDSIISE*DAVKYLPFKLSDYDRFYPPVKQCLRCL 276
+KRR+KKE+ +G ++ AAV++S+ + + LPF + + Y P + +RC+
Sbjct: 62 EKRRQKKEECQGGNQSGAAVKESEASHLNI---TPRRLPFTIINNVAHYGPNE--IRCV 115
>12_01_0117 +
893924-893971,894944-895003,895024-895174,895410-895884,
895974-896316,896347-896391,896533-896631,896708-896828,
897032-897255
Length = 521
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 181 WSPTSSPAPQRFPRSLPRHLPFSYAF 104
W PT +P+ RS+P HLP S +
Sbjct: 26 WDPTQLFSPENLIRSMPMHLPRSLQY 51
>04_03_0459 +
16159015-16159771,16160251-16160365,16160478-16160844,
16160930-16161244,16161324-16161644,16161730-16161882
Length = 675
Score = 23.8 bits (49), Expect(2) = 3.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 94 RGKKRRKKKEDVEGDSEESAAVR 162
RGK RR++ + D +ES A R
Sbjct: 188 RGKARRRRTRRIRNDMDESDAGR 210
Score = 23.0 bits (47), Expect(2) = 3.1
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +1
Query: 253 VKQCLRCLR*GHIAKFCKK 309
VK C +C GH K C K
Sbjct: 211 VKHCSKCDERGHTYKHCPK 229
>10_08_0427 +
17828007-17828570,17829788-17829904,17830319-17830384,
17831466-17831572,17831939-17832017,17832861-17833574,
17834040-17834148,17834263-17834429,17834876-17834950,
17835025-17835117,17835202-17835294
Length = 727
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 178 SPTSSPAPQRFPRSLPRHLPFSYAFFYRGTSRQQ 77
SP+S+ A +R P L R FS++F+ S++Q
Sbjct: 476 SPSSTKAFERMPARLERRDRFSFSFYTEQYSKRQ 509
>07_01_0713 -
5438005-5438294,5438441-5438567,5438638-5438687,
5439119-5439426,5439581-5439673,5439840-5440197,
5440235-5440267,5440324-5440482,5440734-5440908
Length = 530
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +1
Query: 142 EESAAVRDSKLDSIISE*DAVKYLPFKLSDYDRFYPP 252
+++ +RD +L + ++ AV L K++DY RFY P
Sbjct: 233 QQAVELRDGRLLELPADETAVPKLQQKINDYLRFYLP 269
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 262 CLRCLR*GHIAKFCKKAERC 321
C+RCL GHIA C RC
Sbjct: 230 CVRCLDKGHIASNCSGPVRC 249
>02_02_0489 + 10869482-10871218
Length = 578
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 91 SRGKKRRKKKEDVEGDSEESAAVRDSKLD 177
S+ KK + KK+ V GDS+E+A ++ K+D
Sbjct: 301 SKNKKGQAKKDKVSGDSKEAA--KEDKVD 327
>01_04_0130 +
16462428-16463210,16463644-16463796,16464707-16464784,
16465229-16465348,16465419-16465585,16465683-16465710
Length = 442
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 79 VAAMSRGKKRRKKKEDVEGDSEESAAVRDSK 171
+A MSR R++K + EG E +A RD+K
Sbjct: 170 LAKMSRPPARKRKGKKDEGGGEAAATARDTK 200
>11_01_0256 + 1969292-1969563,1970004-1970270,1970413-1970989
Length = 371
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 339 IPQRDGAPFSFFTKFGNVTLSQATEALFYWRIETVIIR*FKRKILNSVLFRDN 181
+P+R G+PFSF V + T +++ T R +R+ LN V+ DN
Sbjct: 145 VPKRTGSPFSF---SNGVEIDHETGVIYFTETST---RFQRREFLNIVITGDN 191
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 83 PRCPAVKKGVRKRKMSRETPRKALRCGTRSWTPLSLNK 196
PRC V + +++ E PR CG + LS NK
Sbjct: 223 PRCGLVYLSLYSNQLAGELPRSLTNCGNLTVLYLSYNK 260
>04_03_0457 +
16113087-16113249,16113468-16113498,16114138-16114271,
16114370-16114518,16114974-16115039,16115159-16115206,
16115293-16115496,16115614-16115637
Length = 272
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 181 WSPTSSPAPQRFPRSLPRHLP 119
W P+S+P P R P +L R P
Sbjct: 19 WLPSSAPTPPRRPTTLSRRAP 39
>10_08_0531 +
18576913-18578058,18578724-18578843,18578924-18578970,
18579588-18579630
Length = 451
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 73 VVVAAMSRGKKRRKKKEDVEGDSEESAAVRDSKLDS 180
V+ A RGK+R+K D E SEES S D+
Sbjct: 272 VIDDAGHRGKRRKKSFSDQEASSEESNEQSSSAHDN 307
>08_02_1243 - 25527523-25527960,25527993-25528604
Length = 349
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 379 LVRQAARSASVPKGCSSSSRMRPS 450
+ +QAA S S+P+ C+ SSR P+
Sbjct: 74 MTQQAATSVSLPRWCTPSSRGAPT 97
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 94 RGKKRRKKKEDVEGDSEESAAV 159
R ++RR+ +ED GD E+SAA+
Sbjct: 742 RRRQRRESEEDGSGDREQSAAL 763
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,022,463
Number of Sequences: 37544
Number of extensions: 203101
Number of successful extensions: 765
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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