Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0459
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical pr...    31   0.58 
AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical ...    31   0.58 
U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    28   4.1  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    28   4.1  
U49945-4|AAC47924.1|  535|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormo...    27   9.4  

>Z78064-4|CAB01507.1|  235|Caenorhabditis elegans Hypothetical
           protein F57B1.7 protein.
          Length = 235

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 118 KEDVEGDSEESAAVRDSKLDSIISE*DAVKYLPFKLSDYDRFYPPVKQCLRC 273
           K+D  GD +      +S +D I           F LS+Y RF+PP+   L C
Sbjct: 168 KDDESGDEDSDGLNSNSIIDVITDYPIFCLSRAFVLSNYPRFHPPLHLTLDC 219


>AF016428-6|AAK71396.2| 1733|Caenorhabditis elegans Hypothetical
           protein T05C3.2 protein.
          Length = 1733

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 236 TVSILQ*NSASVA*DKVTLPNFVKKLKGAPSLWGIYPR 349
           T+S  Q N+ S A DK TLP FVK +    + W  Y R
Sbjct: 636 TLSERQWNTVSKALDKCTLPLFVKLIYATVARWKSYSR 673


>U39852-6|AAK39259.1|  418|Caenorhabditis elegans Hypothetical
           protein K10C2.4 protein.
          Length = 418

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +1

Query: 139 SEESAAVRDS---KLDSIISE*DAVKYLPFKLSDYDRFYPPV 255
           SE+ A +RD+   +  +++++ DA  +LP ++ DY  FY  +
Sbjct: 91  SEDCAVLRDNAHLRSRALVAQSDATMHLPAQIGDYTDFYSSI 132


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +1

Query: 55  SHINWCVVVAAMSRGKKRRKKKEDVEGDSEESAAVRDSKLDSI 183
           S I+WC +V  +   +  +K+KE+ + + ++  +  ++ + SI
Sbjct: 480 SIIHWCGIVPLVESTRSTKKEKEEADREKKKHVSFGEAPVSSI 522


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +1

Query: 55  SHINWCVVVAAMSRGKKRRKKKEDVEGDSEESAAVRDSKLDSI 183
           S I+WC +V  +   +  +K+KE+ + + ++  +  ++ + SI
Sbjct: 480 SIIHWCGIVPLVESTRSTKKEKEEADREKKKHVSFGEAPVSSI 522


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
           protein Y39A1B.3 protein.
          Length = 1499

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 106 RRKKKEDVEGDSEESAAVRDSKLDSIISE 192
           R ++ +D+E D +++ ++ D  + S++SE
Sbjct: 607 RERRSDDMEDDDDDTVSLEDDDMTSLVSE 635


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
           compensation protein protein.
          Length = 1455

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 106 RRKKKEDVEGDSEESAAVRDSKLDSIISE 192
           R ++ +D+E D +++ ++ D  + S++SE
Sbjct: 563 RERRSDDMEDDDDDTVSLEDDDMTSLVSE 591


>U49945-4|AAC47924.1|  535|Caenorhabditis elegans Hypothetical
           protein C02H7.1 protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 100 KKRRKKKEDVEGDSEESAAVR 162
           KK++ KKED +GD EE +  +
Sbjct: 123 KKKKVKKEDKKGDEEEKSTTK 143


>AF067218-1|AAC17021.1| 1451|Caenorhabditis elegans Hypothetical
           protein K10E9.1 protein.
          Length = 1451

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 368 QVYPDSFEDKYPKEMEHLSAFLQNLAM*PYLKQRRHC 258
           Q+  D  ED++ +   H S + QNL + P  KQ  +C
Sbjct: 383 QIMEDQEEDEFLQSARHFSKWPQNLTL-PIQKQTINC 418


>AF016654-7|AAB66029.2|  324|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 72 protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 376 SGTKSTRTASRINTPKRWSTFQLFYKIWQCDLI 278
           SG+ ++ + SR N+P+ +S F    KI   DL+
Sbjct: 87  SGSSNSSSTSRSNSPQTYSGFSKILKIHHEDLL 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,120,196
Number of Sequences: 27780
Number of extensions: 162687
Number of successful extensions: 611
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)