Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0459
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   3.0  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   6.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 387 PHQGPGPSLPGQ 352
           P + PGP LPGQ
Sbjct: 22  PKEEPGPGLPGQ 33


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 387 PHQGPGPSLPGQ 352
           P + PGP LPGQ
Sbjct: 22  PKEEPGPGLPGQ 33


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 387 PHQGPGPSLPGQ 352
           P + PGP LPGQ
Sbjct: 22  PKEEPGPGLPGQ 33


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 376 SGTKSTRTASRINTPKRW 323
           +GT S  T   +N P RW
Sbjct: 664 AGTASHSTTLTVNVPPRW 681


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 389 CLTRVRDQVYPDSFED 342
           C +++   +Y D+FED
Sbjct: 137 CFSKLLSDMYEDTFED 152


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 416 FGTEAERAACLTRVRDQVYPDSFEDKYP 333
           FG   E A      R  ++ D+ E KYP
Sbjct: 316 FGALLEFALVNYASRSDMHSDNIEKKYP 343


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 416 FGTEAERAACLTRVRDQVYPDSFEDKYP 333
           FG   E A      R  ++ D+ E KYP
Sbjct: 316 FGALLEFALVNYASRSDMHSDNIEKKYP 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,127
Number of Sequences: 438
Number of extensions: 1957
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)