Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0457
         (341 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   1.5  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   3.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   4.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   4.6  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    20   8.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    20   8.1  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +3

Query: 144 NLQSLKVCLTFHFRHARRGIDAISLAPVETAP 239
           +L ++++C        RRG   + L PV + P
Sbjct: 200 DLNAVRLCFQVFLEGERRGKFTVPLTPVVSEP 231


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +2

Query: 188 CSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 310
           C     C I   +RNR               R+ V+ +RQR
Sbjct: 122 CREEKNCIIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQR 162


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 86  VYNFSNGTLSVCVLNDRHTQF 148
           + +FS      CVL+D  TQF
Sbjct: 248 IEDFSGYIKPKCVLSDHGTQF 268


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -3

Query: 222 APEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFE 97
           +PE+   S D     E  N    + + +    +T T   PFE
Sbjct: 123 SPEVKDSSRDRPFTCEVCNRSFGYKHVLQNHERTHTGEKPFE 164


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/35 (20%), Positives = 18/35 (51%)
 Frame = +3

Query: 168 LTFHFRHARRGIDAISLAPVETAPPS*ASDRRCKK 272
           ++++   + + +D +    +   PP+  +DR C K
Sbjct: 320 ISYNVLQSMKYLDQVVCESLRLWPPAPQTDRLCNK 354


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 5/18 (27%), Positives = 11/18 (61%)
 Frame = -2

Query: 157 KLCKLCMAIVQNTNTQCP 104
           + C +C+  + +TN + P
Sbjct: 21  QFCAICVPKITSTNNEVP 38


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,625
Number of Sequences: 336
Number of extensions: 1548
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6664455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)