Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0457
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 32 0.028
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 29 0.15
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 0.80
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch... 25 2.4
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 3.2
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 3.2
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 25 4.3
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 4.3
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 24 5.6
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 24 5.6
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 24 7.5
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 7.5
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 24 7.5
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 23 9.8
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar... 23 9.8
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 23 9.8
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 23 9.8
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 23 9.8
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 31.9 bits (69), Expect = 0.028
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 289 MFPVFTFLHRRSLAHDGGAVSTGARDIASIPRRACR 182
++ F FLH R +A + G S +R++A+I + R
Sbjct: 661 IYRAFVFLHNRDIAENNGVFSARSRNVATIAAKGAR 696
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 29.5 bits (63), Expect = 0.15
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 83 FVYNFSNGTLSVCVLNDRHTQFTKFEGVFDF 175
F+ N G L+V N + +FT F+G FDF
Sbjct: 2 FLQNLFLGFLAVVCANAQFAEFTAFDGKFDF 32
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.1 bits (57), Expect = 0.80
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -3
Query: 102 FEKLYTKWSCERIESTLHSL 43
F+K +T CERIESTLH L
Sbjct: 510 FKKKFTT-ICERIESTLHEL 528
>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +3
Query: 144 NLQSLKV--CLTFHFRHARRGIDAISLA 221
NL+SL V CL +HF ++ G+D+ +++
Sbjct: 216 NLKSLYVELCLVYHFHNSHLGMDSSTVS 243
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 3.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 153 FVNCVWRSFKTQTLNVPFEKLY 88
F+NC W F + FEKLY
Sbjct: 185 FINCNWPIFYKKQYMESFEKLY 206
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.0 bits (52), Expect = 3.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 256 SLAHDGGAVSTGARDIASI 200
SL++DG +S G +DIAS+
Sbjct: 553 SLSYDGKFISPGIKDIASL 571
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 24.6 bits (51), Expect = 4.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 114 LNVPFEKLYTKWSCERIESTLHSLSC 37
LN+P + + WSC+ + + L LSC
Sbjct: 4 LNIPTKNTF-HWSCDPLFNELKRLSC 28
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 4.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 160 FKLCKLCMAIVQNTNTQC 107
F LCKL MA TNT C
Sbjct: 372 FGLCKLNMAKTDRTNTFC 389
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 24.2 bits (50), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 132 IAIHNLQSLKVCLTFHFRHARRGIDAIS 215
+ I L S CL FHF GID ++
Sbjct: 1616 VTISELTSESGCLFFHFEKDDSGIDHVT 1643
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 24.2 bits (50), Expect = 5.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 337 SNRNPLLASALTIRPXMFPVFTFLHRRSLAHD 242
+ R P AS P P+ TFL RS +HD
Sbjct: 240 TTRGPTTASIEYFTPRK-PIDTFLEHRSSSHD 270
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 210 SHRSLDEHVESEKSNT 163
+H+S DEH ES+ S+T
Sbjct: 558 THKSSDEHSESKHSHT 573
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 322 LLASALTIRPXMFPVFTFLHRRSLAH 245
+L L I+P FP FTF ++H
Sbjct: 1741 ILECFLAIQPRSFPAFTFAWLSLISH 1766
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 23.8 bits (49), Expect = 7.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 41 LNECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLS 184
L + S++S + L V+N N + + D + F V DF LS
Sbjct: 205 LGDFSLISYVKVLCGVFNIPNYNAFILSVEDLLPENISFAAVADFQLS 252
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/57 (22%), Positives = 27/57 (47%)
Frame = -3
Query: 216 EISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCERIESTLHS 46
E+ ++ L ++ E +S +F +W+S T N + + W + +S +HS
Sbjct: 1102 EVLYQILLQNHEFSESCYKRHFDRLIWQSLDTTPDNKLLKNILYIWLNDYKDSDIHS 1158
>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 106 PVRKVIHKMELRENREHTALVEL 38
P+ +V+H++EL+ + + ALV L
Sbjct: 253 PLNQVLHELELKSFKPNCALVLL 275
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 23.4 bits (48), Expect = 9.8
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = +1
Query: 103 RDIECLCFERSP 138
+DI+C+CF + P
Sbjct: 77 KDIDCICFTKGP 88
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 23.4 bits (48), Expect = 9.8
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = -2
Query: 229 STGARDIASIPRRACRK*KVKHTFKLCKLCMAIVQNTNTQCPVRKVIHKMEL 74
S G+ D +S+P + +LC + + +T P+R+++H + L
Sbjct: 87 SLGSHDSSSLPSSTNNRYS-SVLKELCNTYLPSILSTYGSLPIRRLLHHLSL 137
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 23.4 bits (48), Expect = 9.8
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -3
Query: 150 VNCVWRSFKTQTLNV 106
VNC+W +F Q + V
Sbjct: 198 VNCLWEAFSPQVMEV 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,486
Number of Sequences: 5004
Number of extensions: 24818
Number of successful extensions: 75
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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