Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0457
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793... 31 0.18
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 0.72
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695... 29 0.95
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 29 1.3
02_04_0552 - 23804154-23805326 28 1.7
03_06_0744 + 35910512-35910569,35911145-35911325,35912332-359124... 28 2.2
03_05_0092 - 20714102-20717902 28 2.2
02_01_0424 - 3097245-3099377 28 2.2
02_04_0418 - 22742220-22743108,22743393-22743397 26 6.7
01_06_1501 + 37804029-37804600,37804626-37805388 26 6.7
12_02_0001 - 12066231-12066341,12066745-12066825,12067056-120671... 26 8.9
11_06_0103 + 20131153-20131418,20132256-20132331,20132602-20132625 26 8.9
07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062 26 8.9
03_01_0321 + 2512830-2513114,2513390-2513428,2513647-2513674,251... 26 8.9
>11_06_0470 +
23977394-23977503,23977755-23977922,23978724-23979367,
23979584-23979823,23980175-23980296,23980397-23981080
Length = 655
Score = 31.5 bits (68), Expect = 0.18
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = -3
Query: 210 SHRSLDEHVES-----EKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCERI 64
SH+S+D V+ K+N VNC+ RS + +VPF K + C I
Sbjct: 131 SHKSIDAAVKDTIRHLRKNNVELTKVNCILRSMRGSAESVPFTKNSVRTVCAEI 184
>01_05_0553 +
23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.5 bits (63), Expect = 0.72
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 276 SLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFV 148
SL ++DD ++E +SH D +VESE+ N ++FV
Sbjct: 589 SLLHMDDSIKLSEVAPSEC-SVSHECFDSNVESEEKNMVTSFV 630
>08_02_0925 -
22668875-22668889,22668942-22669018,22669383-22669500,
22669662-22669685,22670067-22670360,22670456-22670563,
22671098-22671946
Length = 494
Score = 29.1 bits (62), Expect = 0.95
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Frame = -3
Query: 294 RTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLD--EHVESEKSNTPSNFVNCVWRSFKT 121
R+ L + FY L T RAP + H ++ +H E++ +F+N +W +
Sbjct: 286 RSLTLHTNFYKASSILSTFGLLTRAPNLLHLEIEITDH-ENQSDEVDIDFLNALWTNSLF 344
Query: 120 QTLNVPFEKLYTKWSCE 70
L+ K T WS E
Sbjct: 345 ANLDFVSIKSATCWSNE 361
>07_03_0909 +
22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 28.7 bits (61), Expect = 1.3
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +2
Query: 41 LNECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLSTCSS 196
+NE S LS S+ H SNG+L V VL T + +FEG S+ C S
Sbjct: 389 VNEVSFLSYNSKNHIAAYLSNGSLCVSVLPVADT-WEEFEG-SGISVDPCFS 438
>02_04_0552 - 23804154-23805326
Length = 390
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 17 LLSVAHRQLNECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQ 145
++S+A LN L S+LH + +S+ +S CVL +TQ
Sbjct: 348 VISIARWTLNPPGALPWSSELHELTGYSSQDISSCVLTVLNTQ 390
>03_06_0744 +
35910512-35910569,35911145-35911325,35912332-35912419,
35912541-35912726,35913591-35913725,35913803-35913862,
35914609-35914698,35915384-35915515,35916039-35916183,
35916266-35916439,35916629-35916692,35916778-35916847,
35917328-35917445,35918258-35918280,35918398-35918499,
35919831-35920250,35920327-35920563
Length = 760
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 271 FLHRRSLAHDGGAVSTGARDI 209
F H AHD GAVSTGA +
Sbjct: 39 FSHGADSAHDAGAVSTGASGV 59
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 288 CFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVW 136
CF+ ++DD+ + L+ H S D+ ES S P +++NC++
Sbjct: 1078 CFITHGAWVDDYPFLFSVWTLKVTSCPHVSTDQ--ESSFSIEPLDWLNCLF 1126
>02_01_0424 - 3097245-3099377
Length = 710
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +2
Query: 53 SVLSILSQLHFVYNFSNGTLSVCV-----LNDRHTQFTKFEGVFDFSLSTCSS 196
S LS L LH YN GT+ V LN F KF G F ++ S
Sbjct: 339 SKLSSLKSLHVSYNSFAGTIPESVYTCSNLNALQLSFNKFHGQLSFRITNLKS 391
>02_04_0418 - 22742220-22743108,22743393-22743397
Length = 297
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -3
Query: 171 SNTPSNFVNCVWRSFKTQTLNVP 103
+NT + + +WRSF+T +NVP
Sbjct: 129 ANTTALSLRPMWRSFETSIVNVP 151
>01_06_1501 + 37804029-37804600,37804626-37805388
Length = 444
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 262 RRSLAHDGGAVSTGARDIASIPRRACRK*KVKH 164
RR L HDGG +PRRA R + +H
Sbjct: 117 RRVLGHDGGVPPRLLARHGDVPRRATRPRRRRH 149
>12_02_0001 -
12066231-12066341,12066745-12066825,12067056-12067136,
12068017-12068097,12068337-12068417,12068492-12068572,
12068647-12068727,12070748-12070828,12070903-12070983,
12071551-12071631,12072036-12072116,12072519-12072599,
12072839-12072919,12073468-12073548,12074108-12074188,
12074428-12074508,12075076-12075156,12075396-12075476,
12075561-12075641,12076356-12076436,12076676-12076756,
12077326-12077406,12077811-12077891,12078131-12078211,
12078286-12078366,12079586-12079666,12079906-12079986,
12081341-12081421,12081793-12081873,12083074-12083154,
12083714-12083794,12084034-12084114,12084354-12084434,
12084674-12084754,12084829-12084909,12084984-12085064,
12085304-12085384,12087109-12087189,12087429-12087509,
12087584-12087664,12089204-12089284,12090339-12090419,
12090659-12090739,12091621-12091701,12092754-12092834,
12093074-12093154,12093155-12093310,12093550-12093630,
12094454-12094512,12094610-12094691,12096312-12096392,
12096789-12096869,12097768-12097907,12099296-12099377,
12100185-12100265,12100999-12101079,12101484-12101564,
12101814-12101894,12102628-12102708,12103744-12103824,
12104869-12104949,12105189-12105269,12105509-12105589,
12106322-12106402,12106477-12106557,12107448-12107528,
12108050-12108145,12109578-12109584,12110097-12110293
Length = 1929
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 49 VQCALDSLAAPFC 87
+QC+L SLA+PFC
Sbjct: 11 LQCSLPSLASPFC 23
>11_06_0103 + 20131153-20131418,20132256-20132331,20132602-20132625
Length = 121
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -2
Query: 265 HRRSLAHDGGAVSTGARDIASIPRRACRK 179
H L GGA S G R + PRR CR+
Sbjct: 10 HLLVLVGGGGADSRGQRRRSRSPRRRCRR 38
>07_03_1516 + 27367518-27368552,27368828-27369097,27369616-27370062
Length = 583
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 307 LTIRPXMFPVFTFLHRRSLAHDGG 236
L I +F VF+F+ RRSL GG
Sbjct: 144 LYITACIFEVFSFIPRRSLIRHGG 167
>03_01_0321 +
2512830-2513114,2513390-2513428,2513647-2513674,
2513893-2513975,2514104-2514144,2514539-2514624,
2514941-2514963
Length = 194
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 5 CSGRLLSVAHRQLNE--CSVLSILSQLHFVYNFSN 103
C LLS + L + C LS+ S HF+YN ++
Sbjct: 135 CMQLLLSKLSKMLCDINCDPLSLYSSFHFLYNLTS 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,145
Number of Sequences: 37544
Number of extensions: 166276
Number of successful extensions: 486
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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