Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0457
         (341 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.43 
SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.56 
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 29   0.99 
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)                   29   1.3  
SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)                 29   1.3  
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   28   1.7  
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 27   3.0  
SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.0  
SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_42384| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_39310| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_23048| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.0  
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)              26   9.2  
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)                26   9.2  
SB_9515| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.2  
SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)                    26   9.2  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.2  

>SB_44331| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1916

 Score = 30.3 bits (65), Expect = 0.43
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = -3

Query: 279  CSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPF 100
            CSL  +        A F R P ++ R+ D HV ++    P+       +  K + L VP 
Sbjct: 1653 CSLIGLYTRRRELAAAFTRTPAVNQRATDPHVAADDVTPPARPPLAAAQQTKDRQLAVPA 1712

Query: 99   EKLYTKWSCE 70
              L     C+
Sbjct: 1713 TALRAPGQCK 1722


>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 19/78 (24%), Positives = 30/78 (38%)
 Frame = -3

Query: 303 RSARTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFK 124
           +S +   L SL  +        A F R P ++ R+ D HV ++    P+          K
Sbjct: 699 QSRKATMLVSLIGLYTRKRELAAAFTRTPAVNQRATDPHVVADDVTPPARPPLAATEQTK 758

Query: 123 TQTLNVPFEKLYTKWSCE 70
            + L VP   L     C+
Sbjct: 759 DRPLAVPATALRAPGQCK 776


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 18/78 (23%), Positives = 31/78 (39%)
 Frame = -3

Query: 303 RSARTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFK 124
           +S +   L SL  +        A F R P ++ R+ D HV ++    P+       +  K
Sbjct: 704 QSRKATLLVSLIGLYTRRRELAAAFTRTPAVNQRATDPHVAADGVTPPARPPLAAAQQTK 763

Query: 123 TQTLNVPFEKLYTKWSCE 70
            + L +P   L     C+
Sbjct: 764 DRPLAIPATALRAPGQCK 781


>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
          Length = 1264

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = -3

Query: 282  LCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVP 103
            L SL  +  H     A F R P +  R+ D HV ++    P+       +  + + L VP
Sbjct: 869  LVSLIGLYTHRRELAAAFTRTPAVRQRATDPHVAADDVTPPARPPLAAAQQTRDRPLAVP 928

Query: 102  FEKLYTKWSCE 70
               L     C+
Sbjct: 929  ATALRPPGQCK 939


>SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)
          Length = 745

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/71 (25%), Positives = 28/71 (39%)
 Frame = -3

Query: 282 LCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVP 103
           L SL  +  H     A F R P +  R+ D HV ++    P+       +  + + L VP
Sbjct: 521 LVSLIGLYTHRRELAAAFTRTPAVRQRATDPHVAADDVTPPARPPLAAAQQTRDRPLAVP 580

Query: 102 FEKLYTKWSCE 70
              L     C+
Sbjct: 581 ATALRPPGQCK 591


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -3

Query: 237 ARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCE 70
           A F R P ++ R+ D HV ++    P+       +  K + L VP   L     C+
Sbjct: 766 AAFTRTPAVNQRATDPHVAADDVTPPARPPLAAAQQTKDRPLAVPATALRAPGQCK 821


>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 669

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -3

Query: 237 ARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCE 70
           A F R P ++ R+ D HV ++    P+       +  K + L +P   L     C+
Sbjct: 539 AAFTRTPAVNQRATDPHVAADGVTPPARPPLAAAQQTKDRPLAIPATALRAPGQCK 594


>SB_30325| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 682

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 222 APEISHRSLDEHVESEKSNTPSNFV-NCVWRSFKTQTLNVPFEKLYTKWSCE 70
           +P++S + LD  +  +   T + ++ N  W + +T  ++   E++YT WS E
Sbjct: 335 SPDLSRQDLDHGISRQ---TFTQYIRNQTWITGQTNQVSHAIEQVYTDWSNE 383


>SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 159 SNFVNCVWRSFKTQTLNVPFEKLYTK-WSCERIESTLHSLSCLCATDSK 16
           S F   + ++ KT+T N      Y K W+    E +  +LS L ATDSK
Sbjct: 751 SCFTADLCKTVKTETKNYRPTVAYVKRWTTALAEDSAMTLSTLPATDSK 799


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
 Frame = -3

Query: 264  IDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTP------SNFVNCVWRSFKTQTLNVP 103
            I   SL     FL+  EISH    +H+ SE    P       N V     +FK+      
Sbjct: 1797 IPSPSLPPPPEFLQEDEISH----DHLSSELIPPPPLPELDQNKVISAPTAFKSSPKREH 1852

Query: 102  F-EKLYTKWSCERIESTLHSL 43
            F  K  T+WSC+ + S L SL
Sbjct: 1853 FLVKPLTEWSCDDVCSWLESL 1873


>SB_40167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 71   SQLHF-VYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLSTCSSRDR 205
            +Q H+ VYNF N  +  C+L     + T F G  D S     SR R
Sbjct: 1463 NQFHYKVYNFKNAKIERCLLGKASKRTTAF-GAIDESHVIGLSRGR 1507


>SB_17613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1004

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 153 SLKVCLTFHFRHARRGIDAISLAPVE 230
           +LK CL  + +HA R  DA S+ P E
Sbjct: 69  TLKNCLDSYLQHAPRWFDASSVVPRE 94


>SB_42384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = -3

Query: 183 ESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCERIESTLHSLSCLCATDSKRPLH 4
           E + +  P  F +    S +T+   +  E L + W+CER    L  L         +PL 
Sbjct: 71  EDKGTLRPVAFCSRTLTSTETRYSQIEKECLASVWTCERFSRYLIGLESFTLLTDHKPLV 130

Query: 3   P 1
           P
Sbjct: 131 P 131


>SB_39310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 144 CVWRSFKTQTLNVPFEKLYTKWSCERIEST 55
           C WR +K   + V  E+  ++  C+R+E T
Sbjct: 248 CYWRIYKQVRICVAKERKLSRLVCDRVELT 277


>SB_28106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1206

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -3

Query: 303 RSARTCFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTP 160
           +S +   L SL  +        A F R P ++ R+ D HV ++    P
Sbjct: 800 QSRKATLLVSLIGLYTRRRQLAAAFTRTPAVNQRATDPHVAADGVTPP 847


>SB_23048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = -3

Query: 138 WRSFKTQTLNVPFEKLYTKWSCERIESTLHSLSCLCATDSKRPLHP 1
           WR  K  T N     LY    C      + S   LC+  +KRP  P
Sbjct: 6   WRIAKNLTKNTGLRCLYDYPPCPTGFPCVRSPKALCSIKAKRPSGP 51


>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 564

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 256 SLAHDGGAVSTGARDIASIPRRACRK*KVKHTFKLCKLCMAIVQNTNTQCPVRKVIHK 83
           ++ HD G+   G R I+ + R  CR  K   + K    C+  +   + +CP   V+ K
Sbjct: 92  TVCHDDGSWLFGQRSISCVDRNECRFRKGGCSHK----CVNTIGGYHCECPDPLVLDK 145


>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
          Length = 697

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 213 ISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLN 109
           +S  +  + V+SE  + P N ++  WRSFK QTL+
Sbjct: 242 LSEENFTDFVKSEV-HRPGNTID--WRSFKGQTLH 273


>SB_9515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 68  LSQLHFVYNFSNGTLSVCVLNDRHTQFTK-FEGVFDFSLSTCSSRDRCDIS 217
           LS   +   +SNG L++C+    + +F K F G+  F  ST + +  C I+
Sbjct: 54  LSTFAYTILYSNGFLNLCIYVAMNEKFRKEFRGLLGFR-STGNPQGVCKIA 103


>SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)
          Length = 564

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 220 ARDIASIPRRACRK*KVKHTFKLCKLCMAIVQNTN 116
           ARD+A+I +R   K  +KHT  L  L    + ++N
Sbjct: 361 ARDVATITKRCLPKSDLKHTHALRLLHQKAIVSSN 395


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = -2

Query: 199 PRRACRK*KVKHTFKLCKLCMAIVQNTNTQCPVRKVIHKMEL 74
           PR  CR         +CK C   +Q+   Q    KV H+M +
Sbjct: 546 PRSGCRPINSMGRTLVCKRCFRFLQSKWEQFESEKVPHQMRI 587


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,899,892
Number of Sequences: 59808
Number of extensions: 200939
Number of successful extensions: 607
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)