Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0457
(341 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone... 32 0.12
U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone... 32 0.12
AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear recep... 32 0.12
AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear recep... 32 0.12
AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear recep... 32 0.12
U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone... 29 0.66
Z69883-4|CAA93742.2| 480|Caenorhabditis elegans Hypothetical pr... 28 2.0
AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical ... 27 3.5
Z81017-12|CAD91635.1| 394|Caenorhabditis elegans Hypothetical p... 27 4.7
Z78537-3|CAD91626.1| 394|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical pr... 26 6.1
Z99286-1|CAH60792.1| 311|Caenorhabditis elegans Hypothetical pr... 26 8.1
Z79757-5|CAB02126.2| 551|Caenorhabditis elegans Hypothetical pr... 26 8.1
AY491013-1|AAS18682.1| 464|Caenorhabditis elegans nose resistan... 26 8.1
AY491012-1|AAS18681.1| 573|Caenorhabditis elegans nose resistan... 26 8.1
AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical... 26 8.1
>U61950-6|AAC24291.1| 528|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform a protein.
Length = 528
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 164 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 310
VF+ + CS+ + CDI+ RNR + KHVR +R +
Sbjct: 127 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 175
>U61950-5|AAL02466.1| 576|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform b protein.
Length = 576
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 164 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 310
VF+ + CS+ + CDI+ RNR + KHVR +R +
Sbjct: 175 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 223
>AF273791-1|AAG15139.1| 525|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 525
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 164 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 310
VF+ + CS+ + CDI+ RNR + KHVR +R +
Sbjct: 124 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 172
>AF273790-1|AAG15138.1| 534|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 534
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 164 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 310
VF+ + CS+ + CDI+ RNR + KHVR +R +
Sbjct: 133 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 181
>AF273787-1|AAG15135.1| 527|Caenorhabditis elegans nuclear receptor
NHR-46 protein.
Length = 527
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 164 VFDFSLSTCSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 310
VF+ + CS+ + CDI+ RNR + KHVR +R +
Sbjct: 126 VFEGRVYMCSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 174
>U61950-7|AAL02467.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 46, isoform c protein.
Length = 395
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 188 CSSRDRCDISGARRNRAXXXXXXXXXXXXXHRKHVRADRQR 310
CS+ + CDI+ RNR + KHVR +R +
Sbjct: 2 CSADNHCDITNESRNRCRACRLRNCLEGGMNPKHVREERSK 42
>Z69883-4|CAA93742.2| 480|Caenorhabditis elegans Hypothetical
protein C27C12.5 protein.
Length = 480
Score = 27.9 bits (59), Expect = 2.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 138 WRSFKTQTLNVPFEKLYT 85
WR F+T TL + +K+YT
Sbjct: 184 WREFETNTLKIKLKKMYT 201
>AC006712-7|AAK39318.2| 264|Caenorhabditis elegans Hypothetical
protein Y119C1B.9 protein.
Length = 264
Score = 27.1 bits (57), Expect = 3.5
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = -3
Query: 210 SHRSLDEHVESEKSNTPSNFVNCVWRSF----KTQTLNVPFEKLYTKWSCE-RIESTLHS 46
S SL + V+ + PS+ VN WR F K + N E++ + +CE R+ S S
Sbjct: 64 SFTSLPQPVQIQWMFRPSDSVNAQWREFPCAKKEEHKNCQKEEIIVESNCEVRMNSLKMS 123
Query: 45 LSCLCA 28
+ CA
Sbjct: 124 GTYKCA 129
>Z81017-12|CAD91635.1| 394|Caenorhabditis elegans Hypothetical
protein C09F12.3 protein.
Length = 394
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 144 CVWRSFKTQTLNVP--FEKLYTKWSCERIESTLHSL 43
C K TL P FE+ + K++ R+E T+H+L
Sbjct: 95 CDQHHMKNHTLYGPCMFERRFLKYTMPRVEVTIHTL 130
>Z78537-3|CAD91626.1| 394|Caenorhabditis elegans Hypothetical
protein C09F12.3 protein.
Length = 394
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 144 CVWRSFKTQTLNVP--FEKLYTKWSCERIESTLHSL 43
C K TL P FE+ + K++ R+E T+H+L
Sbjct: 95 CDQHHMKNHTLYGPCMFERRFLKYTMPRVEVTIHTL 130
>Z82264-5|CAB05156.1| 404|Caenorhabditis elegans Hypothetical
protein C49C3.11 protein.
Length = 404
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = -3
Query: 288 CFLCSLFYIDDHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNC 142
C + +LFY DD ++ F + + L + K NF NC
Sbjct: 86 CLIFTLFYYDDRYILQIQLFSKRSVSTKTILKPYSSINKLRVAINFSNC 134
>Z99286-1|CAH60792.1| 311|Caenorhabditis elegans Hypothetical
protein Y7A9C.7 protein.
Length = 311
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 279 CSLFYIDDHSLMTEARFLRAP-EISHRSLDEHVESEKSNTPSNFVNCVWRS 130
C +F+I + L + L P +S + L ++ S KSNTP F+ +W++
Sbjct: 179 CLIFFIIFNMLSLLSALLHIPIYLSVKKLS-YLASAKSNTPQRFI--IWQT 226
>Z79757-5|CAB02126.2| 551|Caenorhabditis elegans Hypothetical
protein F55B12.5 protein.
Length = 551
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 47 ECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFT 151
E LSI S+LHF YN T++ V N H++ +
Sbjct: 126 ELRELSIESELHFDYN-GTTTVNASVCNVTHSELS 159
>AY491013-1|AAS18682.1| 464|Caenorhabditis elegans nose resistant
to fluoxetine protein.
Length = 464
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 47 ECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFT 151
E LSI S+LHF YN T++ V N H++ +
Sbjct: 14 ELRELSIESELHFDYN-GTTTVNASVCNVTHSELS 47
>AY491012-1|AAS18681.1| 573|Caenorhabditis elegans nose resistant
to fluoxetine protein.
Length = 573
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 47 ECSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFT 151
E LSI S+LHF YN T++ V N H++ +
Sbjct: 123 ELRELSIESELHFDYN-GTTTVNASVCNVTHSELS 156
>AC084158-13|AAK68570.1| 337|Caenorhabditis elegans Hypothetical
protein Y69A2AR.25 protein.
Length = 337
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -3
Query: 240 EARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCERIE 61
E R LR P +S D+ V+++ + TP V +F T ++ KL S +
Sbjct: 252 EFRDLRCPRLSGEGCDKPVDADCTTTPEP-TTTVTTTFPTTSMKKSNSKLDVATSAPVEQ 310
Query: 60 STLHS 46
++L S
Sbjct: 311 TSLQS 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,954,724
Number of Sequences: 27780
Number of extensions: 149282
Number of successful extensions: 507
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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