Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0457
(341 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containi... 31 0.15
At5g35735.1 68418.m04276 auxin-responsive family protein similar... 29 0.61
At2g15640.1 68415.m01791 F-box family protein contains Pfam PF00... 29 0.61
At4g19690.2 68417.m02892 iron-responsive transporter (IRT1) iden... 29 1.1
At3g51740.1 68416.m05673 leucine-rich repeat transmembrane prote... 27 2.5
At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induce... 27 2.5
At5g20050.1 68418.m02387 protein kinase family protein contains ... 27 4.3
At3g47110.1 68416.m05115 leucine-rich repeat transmembrane prote... 26 7.6
At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia l... 26 7.6
At2g16450.1 68415.m01884 F-box family protein contains Pfam PF00... 26 7.6
At1g44780.1 68414.m05130 expressed protein ; expression supporte... 26 7.6
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 25 10.0
At1g51900.1 68414.m05850 hypothetical protein 25 10.0
>At5g61370.1 68418.m07700 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 487
Score = 31.5 bits (68), Expect = 0.15
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -3
Query: 291 TCFLCSLFYID--DHSLMTEARFLRAPEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQ 118
T + CS +D + +L R + +P L+E++ + SN V V S K +
Sbjct: 21 TRYFCSHHLVDRSETALHEVIRIVSSPVGGLDDLEENLNQVSVSPSSNLVTQVIESCKNE 80
Query: 117 TLNVPFEKLYTKWSCERIESTLH 49
T + ++ WSC+ + S+LH
Sbjct: 81 TSPRRLLRFFS-WSCKSLGSSLH 102
>At5g35735.1 68418.m04276 auxin-responsive family protein similar to
auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana]
Length = 404
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Frame = +2
Query: 8 SGRLLSVAHRQLN-----ECSVLSIL-SQLHFVYNFSNGTLSV 118
+G+ L HR N +CS LS L S LH+ YN NGT+S+
Sbjct: 24 NGQSLCNTHRFTNNLAFADCSDLSALGSFLHWTYNEQNGTVSI 66
>At2g15640.1 68415.m01791 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 426
Score = 29.5 bits (63), Expect = 0.61
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 147 NCVWRSFKTQTLNVPFEK 94
NCVWR F T L P+EK
Sbjct: 69 NCVWRFFSTPQLENPYEK 86
>At4g19690.2 68417.m02892 iron-responsive transporter (IRT1)
identical to Fe(II) transport protein [Arabidopsis
thaliana] gi|1353266|gb|AAB01678; member of the Zinc
(Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
Length = 339
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 50 CSVLSILSQLHFVYNFSNGTLSVCVLNDRHTQFTKFEGVFDFSLST 187
C++ +++ L F F L C+L +T KF F F+++T
Sbjct: 212 CTIKGLIAALCFHQMFEGMGLGGCILQAEYTNMKKFVMAFFFAVTT 257
>At3g51740.1 68416.m05673 leucine-rich repeat transmembrane protein
kinase, putative brassinosteroid-insensitive protein
BRI1 - Arabidopsis thaliana, PIR:T09356
Length = 836
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +2
Query: 20 LSVAHRQLN-----ECSVLSILSQLHFVYNFSNGTL 112
+S++H QL+ EC L L L F YN NGT+
Sbjct: 268 VSISHNQLSGSIPRECGGLPHLQSLDFSYNSINGTI 303
>At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induced
protein (AIR12) identical (with 7 residue gap) to
auxin-induced protein AIR12 GI:11357190 [Arabidopsis
thaliana]
Length = 273
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 44 NECSVLSIL-SQLHFVYNFSNGTLSV 118
+ C L +L S LH+ YN SN +LSV
Sbjct: 62 DSCEDLPVLNSYLHYTYNSSNSSLSV 87
>At5g20050.1 68418.m02387 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 452
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 253 LAHDGGAVSTGARDIASIPRRACRK*KVKHTFKLCKLCMAIV 128
LA D STG R + +IP+ + + F+L +C +I+
Sbjct: 408 LAADDDDASTGVRRVVNIPKLQIHR---ERNFRLSSICSSII 446
>At3g47110.1 68416.m05115 leucine-rich repeat transmembrane protein
kinase, putative protein kinase Xa21 receptor type
precursor, Oryza sativa, PIR:A57676
Length = 1025
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Frame = +2
Query: 59 LSILSQLHFVYNFSNGTLSVCVLNDRHTQFTK-----FEGVFDFSLSTCSSRDRCDIS 217
LS L L+ NF +G + V N Q+ F GV LS CSS D+S
Sbjct: 104 LSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLDLS 161
>At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 597
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -2
Query: 157 KLCKLCMAIVQNTNTQCPVRKVIH-KMELRENREHTAL 47
KL + C +QN + C V + H + L+E + H A+
Sbjct: 229 KLSRFCYVPIQNIFSLCDVPNIWHIPLLLKEQKAHEAI 266
>At2g16450.1 68415.m01884 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 427
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -3
Query: 147 NCVWRSFKTQTLNVPFEK 94
+CVWR F + L P+EK
Sbjct: 69 DCVWRFFSSPQLENPYEK 86
>At1g44780.1 68414.m05130 expressed protein ; expression supported
by MPSS
Length = 471
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -3
Query: 222 APEISHRSLDEHVESEKSNTPSNFVNCVWRSFKTQTLNVPFEKLYTKWSCER 67
AP+ S S+ ++V+ + +TPS V+ + S NV E++ K + R
Sbjct: 204 APKCSTESIVKNVKKKVKSTPSKMVSSEYNSDSDTEGNVDNEEVAVKKTMAR 255
>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
Length = 531
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 325 PLLASALTIRPXMFPVFTFLHRRS-LAHDGGAVSTGARDIASI 200
PLL S+L I F F +R+ L HD VST D+ S+
Sbjct: 11 PLLISSLLISFVAFYGFFVKPKRNGLRHDRKTVSTVTSDVGSV 53
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 25.4 bits (53), Expect = 10.0
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 94 LFERDIECLCFERSPYTIYK 153
+ + D++ C+E SP+ +YK
Sbjct: 282 VMDPDVDISCYEESPHEVYK 301
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,290,795
Number of Sequences: 28952
Number of extensions: 132579
Number of successful extensions: 402
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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