Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0456
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   1.6  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   2.1  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    26   2.8  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 86  YFPAKSHKCHSFVHSNFIHSPPLAI 12
           YFP   H CHS   ++    PP+ +
Sbjct: 565 YFPDAPHNCHSVPQNSSYPRPPMQV 589


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 186 LFNLSVKIFNRVFFNPCSAE--LVLQKWXKYF 275
           LFN+SV   NR+  + CS +   + Q+W  +F
Sbjct: 311 LFNISVIYSNRIRMSRCSQKDAQIYQEWYSFF 342


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 183 VLFNLSVKIFNRVFFNPCSAELV 251
           V FNL+  ++N  FF+PC+  L+
Sbjct: 313 VTFNLAKILYNGQFFSPCTRMLL 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,292
Number of Sequences: 5004
Number of extensions: 22708
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)