Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0456
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa...    27   7.0  
At2g14570.1 68415.m01632 SWIM zinc finger family protein               26   9.3  

>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 237

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -2

Query: 325 IFVLFLSKSFL*GTFFQKYFXHFCKTSSA---LQGLKKTRLNILTLKLKST 182
           IF+L ++  F+   FF  YF HF  +SS+   +  + +TR + ++ +  ST
Sbjct: 54  IFILLVALFFM--GFFSVYFRHFADSSSSTVDISSMPRTRSSRMSPRRLST 102


>At2g14570.1 68415.m01632 SWIM zinc finger family protein
          Length = 435

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 352 LFIKVXNLLINVMYARAISHSSPY 423
           LF K+ N L +VMY + +S++ PY
Sbjct: 47  LFTKLRNKLGDVMYWKKVSYTYPY 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,869,631
Number of Sequences: 28952
Number of extensions: 98594
Number of successful extensions: 187
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)