Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0454
(450 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 196 5e-51
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.062
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.082
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.33
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 1.8
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 1.8
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 1.8
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 3.1
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 3.1
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 28 3.1
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 3.1
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 4.1
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 4.1
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042) 28 4.1
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 27 5.4
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 27 9.5
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3) 27 9.5
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077) 27 9.5
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 27 9.5
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 27 9.5
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 196 bits (479), Expect = 5e-51
Identities = 89/124 (71%), Positives = 104/124 (83%)
Frame = +1
Query: 79 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 258
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 259 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRXVNLRQRRA 438
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH VN++QRR
Sbjct: 60 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRF 119
Query: 439 ALAA 450
A+ +
Sbjct: 120 AVCS 123
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 33.9 bits (74), Expect = 0.062
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 352 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 239
Y +HP T+ YH H R H Q+P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
Score = 32.7 bits (71), Expect = 0.14
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 352 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 245
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 343 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 242
HP T+ YH H R H Q+P + H + P
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHP 438
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -3
Query: 352 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 260
Y +HP T+ YH R Q+P + H
Sbjct: 242 YHQHPQVTHRYHQQHPQVTHRYQYQHPQVTH 272
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.082
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 254
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 373 YVHHDTCYRRHPDRTYEYHHHGH 305
Y HH CY RH + Y HH H
Sbjct: 25 YCHHRYCYYRHHHYCW-YRHHYH 46
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.33
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 284
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 376 TYVHHDTCYRRHPDRTYEYHHHGHA 302
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 1.8
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -3
Query: 379 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 275
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/21 (38%), Positives = 10/21 (47%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYEYHHHGH 305
HH + H + YHHH H
Sbjct: 229 HHHNHHHHHHHHYHHYHHHHH 249
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 1.8
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 256 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 372
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 1.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 175 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 300
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 274 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 402
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 3.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYEYHHH 311
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 146 GRGLAAPCTVSLFSEYTDTKGRATDRLI 63
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 169 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 291
RP +SM K R+PY + +E GH+ S T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 3.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 373 YVHHDTCYRRHPDRTYEYHHHGH 305
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYEYHHH 311
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYEYHHHGH 305
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 355 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 260
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -3
Query: 373 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQ 278
Y HH + +H + +HHH H H Q
Sbjct: 257 YHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQ 288
>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
Length = 628
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +1
Query: 271 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 402
WG G+ + R GGG R G +G M GG P W R
Sbjct: 24 WGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 376 TYVHHDTCYRRHPDRTYEYHHHGHA 302
TY H DT +HPD H HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +1
Query: 214 SRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAP 384
SRQPY + GH G G P +RGG + G G G G R AP
Sbjct: 110 SRQPYGPGRGRGHPNGRPMQGRGMQ----PGIRGGMMPQQGPGVRPGFPPAGSRQMAP 163
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 373 YVHHDTCYRR-HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 242
Y HH + H + +++HHH H H ++ +I G++P
Sbjct: 1032 YHHHRRRHHHYHHQQQHQFHHHHHHTHYNYHYRHFLIIDRPGNKP 1076
>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
Length = 356
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -3
Query: 373 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQ-HVQYPMIQHWFGD 248
Y H+D Y H Y+YH+H + H Y H+ D
Sbjct: 299 YYHYDYYYHYHYYYYYDYHYHYDYHYHYDYHYDYHYDYHYHYD 341
>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
Length = 677
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -3
Query: 190 HH*PGPDGWAP*TRTGGAWLHPAPSHSSLNTPT 92
HH W T+T W HP + ++L PT
Sbjct: 117 HHTKTQANWYHPTKTQANWYHPTKTQANLYHPT 149
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 277 TGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 372
+G ++ R PR RGGG G G G RGGR
Sbjct: 501 SGSSIVRRPRRRRGGGGGGGGGGGGGGGGRGGR 533
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -3
Query: 352 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHW 257
+R+H +R +HHH H +P H+
Sbjct: 190 HRQHYNRHRRHHHHHRHRHHHHHPNHPYSHHY 221
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,684,011
Number of Sequences: 59808
Number of extensions: 283418
Number of successful extensions: 911
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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