Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0454
(450 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 186 8e-48
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 184 3e-47
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy... 29 1.1
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 29 1.5
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 29 1.5
At4g39480.1 68417.m05585 cytochrome P450 family protein contains... 28 2.5
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr... 28 3.4
At5g01010.1 68418.m00001 expressed protein 28 3.4
At3g12430.1 68416.m01548 expressed protein ; expression supporte... 28 3.4
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 27 4.4
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 27 4.4
At4g04920.1 68417.m00715 expressed protein 27 5.9
At4g01000.1 68417.m00135 ubiquitin family protein low similarity... 27 5.9
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to... 27 5.9
At1g76010.1 68414.m08825 expressed protein 27 5.9
At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp... 27 7.7
At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp... 27 7.7
At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp... 27 7.7
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 186 bits (452), Expect = 8e-48
Identities = 85/131 (64%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
Frame = +1
Query: 64 MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 237
M+ + ARPLV++ + + T Q + LP V AP+RPD+VN VH +S NSRQPY VS
Sbjct: 1 MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60
Query: 238 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRXV 417
K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWHR V
Sbjct: 61 KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120
Query: 418 NLRQRRAALAA 450
N+ +R A+ +
Sbjct: 121 NVNMKRHAIVS 131
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 184 bits (447), Expect = 3e-47
Identities = 85/128 (66%), Positives = 98/128 (76%), Gaps = 2/128 (1%)
Frame = +1
Query: 73 SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 246
+ ARPLV+V + T Q LP V AP+RPD+VN VH +S NSRQPY VSK+A
Sbjct: 5 AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64
Query: 247 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHRXVNLR 426
GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWHR VN+
Sbjct: 65 GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124
Query: 427 QRRAALAA 450
+R A+ +
Sbjct: 125 MKRHAIVS 132
>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 497
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 88 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 234
LV +++ SE+++ PLPF K+P +PD++ H + NS+ C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 379 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 260
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -3
Query: 379 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 260
R++ H + +H D + E+HHH H R+H ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775
>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
Pfam profile: PF00067 cytochrome P450
Length = 989
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 139 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 234
P+PF K+P +PD++ H + NSR +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 139 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 234
P+PF K+P +PD++ H + NS+ +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887
>At5g17650.1 68418.m02069 glycine/proline-rich protein
glycine/proline-rich protein GPRP - Arabidopsis
thaliana, EMBL:X84315
Length = 173
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYEYHHHGHAEF 296
HH Y H Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = -1
Query: 264 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 133
+TG+ +L+ + VG+P+VL ++ I Q+ DG +E +RE G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243
>At3g12430.1 68416.m01548 expressed protein ; expression supported
by MPSS
Length = 238
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 142 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 29
G W+H SH+ ++ L VG+ + Y+S + P++Y
Sbjct: 38 GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Frame = +1
Query: 232 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 396
+ + G + +AE + + + ++P G G G+ G FGN GG F W
Sbjct: 81 IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 367 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 284
HHD + H D +++ HH H H
Sbjct: 311 HHDHDHDHHHDHNHDHDHHHHDGHDHHH 338
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 157 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE-SWGTGRAVARIPRVRGG 318
K P D + + +S S S VS EA Q++A +WG+G RGG
Sbjct: 403 KKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGG 457
>At4g01000.1 68417.m00135 ubiquitin family protein low similarity to
SP|P13117 Ubiquitin. {Neurospora crassa}; contains Pfam
profile PF00240: Ubiquitin family
Length = 415
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 328 RSGQGAFGNMCRGGRMFAPTKPWRRWHRXVNLRQRR 435
R G+G FG++ RGG M A K + ++ RR
Sbjct: 79 RGGKGGFGSLLRGGGMKAGQKKTNNFDACRDMSGRR 114
>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
glycine-rich protein; atGRP (GI:259447) [Arabidopsis
thaliana]
Length = 145
Score = 27.1 bits (57), Expect = 5.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 274 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 369
G GR R +GGG + G G+ G+ CR G
Sbjct: 88 GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +1
Query: 235 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 366
S+ G + G GR R R RGGG R G G F N G
Sbjct: 302 SQGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343
>At4g31200.3 68417.m04431 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 343 HPD-RTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 239
HP + + Y H H + QH+ +P FG Q P
Sbjct: 57 HPSMQQFPYQHPMHQQQQPQHLPHPPHPQMFGQQQP 92
>At4g31200.2 68417.m04430 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 343 HPD-RTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 239
HP + + Y H H + QH+ +P FG Q P
Sbjct: 57 HPSMQQFPYQHPMHQQQQPQHLPHPPHPQMFGQQQP 92
>At4g31200.1 68417.m04429 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein related to DAN26 [Homo
sapiens] gi|1770394|emb|CAA69591
Length = 650
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -3
Query: 343 HPD-RTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 239
HP + + Y H H + QH+ +P FG Q P
Sbjct: 57 HPSMQQFPYQHPMHQQQQPQHLPHPPHPQMFGQQQP 92
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,503,171
Number of Sequences: 28952
Number of extensions: 195580
Number of successful extensions: 695
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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