Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0450
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    97   2e-21
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.1  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    27   2.8  
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    26   4.8  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.4  

>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
 Frame = +3

Query: 186 QNDDRPKT--YLPDQPLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFP 359
           QND +P    +LP   +  DE+LV D S Y MLH  Q   P LSFDI+ D+LG +R  +P
Sbjct: 65  QNDAQPSKIPWLPGGKINADEKLVADPSVYEMLHNIQVKWPFLSFDILQDSLGEERRAWP 124

Query: 360 MTAYLVAGTQASSAHLNNLLVIKMSNLHPISKPXXXXXXXXXXXXXXXXXQKPQMTFSFI 539
              YLV G+QA  ++ N L V+K+S L+                      + P +    I
Sbjct: 125 HQMYLVGGSQALDSNDNELTVMKLSQLYKTQ-----HDENDDASDNSDVEEDPILEHKSI 179

Query: 540 KHQGCVNRIRA----TNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVVL 680
             +G  NR+R+     N     L AS+ E G+V IW+I   L+++D P V+
Sbjct: 180 STKGACNRVRSARRPANSSKESLLASFHETGKVHIWDIAPHLRSLDSPGVM 230


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 627 DIWNITQQLQAVDDPVVLERYNLETVSNPVKPIYS 731
           DI    ++  A+DD  +   Y +  +SN V+PIYS
Sbjct: 271 DIKPDVEKSDAMDDSKMKVDYTVNEISNAVQPIYS 305


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 195 HRSGHSPLLHSFHRLHSLNLSP 130
           HR  HSP+   FH+   LN+SP
Sbjct: 32  HRLSHSPMAEGFHK-PKLNISP 52


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 531 SFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVV 677
           S+I  +    R+R++  ++  +  S SE G+V +W++  + Q     VV
Sbjct: 217 SYIGLKNMEYRVRSSFNQSETIVFSGSEDGKVYLWDLENETQITSTSVV 265


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
 Frame = -3

Query: 336 QDCL*LCQS*DMGLQFEPD----AASHKQNDHRPIVHLPLKAGLVNKFSGDHRSGHSPLL 169
           +DC          + FEPD     A  K+N       + LK       + +  S    L 
Sbjct: 16  EDCCLTIDRESGAVSFEPDELKPVARSKENSVTLFGSIKLKKDKYLILATEKSSAAQILG 75

Query: 168 HSFHRLHSLNLSPYVHLL 115
           H  +R+H   + PY +LL
Sbjct: 76  HKIYRVHKFEVIPYRNLL 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,723
Number of Sequences: 5004
Number of extensions: 49698
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)