Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0450
(731 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156... 77 2e-14
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161... 76 3e-14
06_03_1175 + 28168007-28170058 29 5.0
03_02_0435 - 8406262-8406419,8406499-8406547,8406577-8407458,840... 29 5.0
07_03_1757 + 29250163-29250349,29250612-29250813,29250898-292510... 28 6.6
02_02_0151 - 7220335-7220819,7220933-7223507 28 6.6
07_03_0701 + 20813500-20814267 28 8.8
06_03_1258 + 28796643-28798169 28 8.8
>12_01_0207 -
1559491-1559544,1559806-1560161,1560244-1560363,
1561523-1561568,1561741-1561858,1561981-1562093,
1562586-1562658,1562743-1562882,1563005-1563075,
1563228-1563396,1563594-1563659,1564052-1564150,
1564271-1564444,1564720-1564798,1564901-1565007,
1565391-1565435
Length = 609
Score = 76.6 bits (180), Expect = 2e-14
Identities = 51/147 (34%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Frame = +3
Query: 228 LKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHL 407
L+E E+L D AY L G PCLSFD+V D LG R+EFP T Y VAGTQA A
Sbjct: 24 LEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERASW 83
Query: 408 NNLLVIKMSNLH-----PISKPXXXXXXXXXXXXXXXXXQK-------PQMTFSFIKHQG 551
N + + K+ N++ PI + P + + H G
Sbjct: 84 NYIGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAANEDTMPILHLKKVAHAG 143
Query: 552 CVNRIRATNFKNSVLAASWSELGRVDI 632
CVNRIR+ N + + A+W + G V +
Sbjct: 144 CVNRIRSMN-QEPHICATWGDTGHVQV 169
>11_01_0204 -
1612505-1612636,1612809-1612926,1613050-1613162,
1613640-1613712,1613797-1613936,1614059-1614129,
1614262-1614430,1614625-1614690,1615081-1615179,
1615298-1615471,1615745-1615823,1615929-1616035,
1616395-1616439
Length = 461
Score = 76.2 bits (179), Expect = 3e-14
Identities = 51/147 (34%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Frame = +3
Query: 228 LKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHL 407
L+E E+L D AY L G PCLSFD+V D LG R+EFP T Y VAGTQA A
Sbjct: 24 LEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGLVRSEFPHTLYGVAGTQAERATW 83
Query: 408 NNLLVIKMSNLH-----PISKPXXXXXXXXXXXXXXXXXQK-------PQMTFSFIKHQG 551
N + + K+ N++ PI + P + + H G
Sbjct: 84 NYIGIFKICNINGKKREPIPASAIDGDSDMDSESSSDEEDEAVNEDTMPILHLKKVAHAG 143
Query: 552 CVNRIRATNFKNSVLAASWSELGRVDI 632
CVNRIR+ N + + A+W + G V +
Sbjct: 144 CVNRIRSMN-QEPHICATWGDTGHVQV 169
>06_03_1175 + 28168007-28170058
Length = 683
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 576 NFKNSVLAASWSELGRVDIWNIT 644
N+ V +WS +GR+D WN+T
Sbjct: 243 NYMVQVTIDNWSPIGRLDNWNLT 265
>03_02_0435 -
8406262-8406419,8406499-8406547,8406577-8407458,
8408976-8409127,8410346-8410616
Length = 503
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 285 AQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHLNNLLVIKM 431
A+ CL T+N N N P + YL+ S A+L++ ++ M
Sbjct: 387 AEKAVACLRHSRRTENTVNPTNSNPESGYLLPSASVSLANLSDKKILSM 435
>07_03_1757 +
29250163-29250349,29250612-29250813,29250898-29251008,
29251112-29251160,29251247-29251353,29251439-29251942,
29252486-29252614,29252865-29253161,29253274-29253720,
29253828-29253893,29254109-29254169,29254314-29254463,
29254555-29254689,29254791-29254818,29255430-29255479
Length = 840
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 510 QKPQMTFSFIKHQGCVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAVDDPVVLERY 689
+KPQ+ +K RI N +++ W R W I+ + V V+ ER
Sbjct: 417 EKPQV---LLKLDLRYRRISWCNGSQALVYEHWYRTRRTRTWVISPDCKDVSPRVLFERS 473
Query: 690 NLETVSNPVKPI 725
+ + SNP P+
Sbjct: 474 SEDAYSNPGSPM 485
>02_02_0151 - 7220335-7220819,7220933-7223507
Length = 1019
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 444 DVGLTFLLPKDYSNVHLTLVFRRPNKQS*EI 352
D GLT +P+D+SN+HL + N+ S E+
Sbjct: 547 DNGLTGDIPQDFSNLHLNFLNLSSNQLSGEV 577
>07_03_0701 + 20813500-20814267
Length = 255
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 730 EYIGLTGFETVSKLYLSNTTGSSTACSCCVIFQMSTRPSSDQLAANTEF 584
E + + VS LYL+ TTGS + C + RPS D + + F
Sbjct: 186 ELAAVASGDGVSPLYLAATTGSGSVCLVAALL----RPSRDGMPSPASF 230
>06_03_1258 + 28796643-28798169
Length = 508
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 521 DDILIHKTSRMCKQNKGYKF*KLCIGSKLVRTRPS*HL-EYHTTAAS 658
D I++H+T N+ Y+ +L +G++ + T P+ HL + H AA+
Sbjct: 54 DAIIVHETDANGVPNELYEAAQLYLGARCLATAPAMHLHKAHGAAAA 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,556,116
Number of Sequences: 37544
Number of extensions: 296889
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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