Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0450
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19540.1 68415.m02283 transducin family protein / WD-40 repea...    95   3e-20
At3g10310.1 68416.m01237 kinesin motor protein-related similar t...    30   1.4  
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    28   7.3  
At1g07390.1 68414.m00788 leucine-rich repeat family protein cont...    27   9.7  

>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
           family protein contains WD-40 repeats (PF00400); similar
           to Glutamate-rich WD repeat protein (GRWD)
           (SP:Q9BQ67)[Homo sapiens]
          Length = 469

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 56/159 (35%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
 Frame = +3

Query: 228 LKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIVTDNLGNDRNEFPMTAYLVAGTQASSAHL 407
           L++ E+L CD SAY  LH    G PCLSFDI+ D LG +R EFP T Y+VAGTQA  A  
Sbjct: 39  LEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGLNRTEFPHTLYMVAGTQAEKAAH 98

Query: 408 NNLLVIKMSNLHPISK--------------PXXXXXXXXXXXXXXXXXQKPQMTFSFIKH 545
           N++ + K++N+    +                                + P +    + H
Sbjct: 99  NSIGLFKITNVSGKRRDVVPKTFGNGEDEDEDDEDDSDSDDDDGDEASKTPNIQVRRVAH 158

Query: 546 QGCVNRIRATNFKNSVLAASWSELGRVDIWNITQQLQAV 662
            GCVNRIRA   +NS +  SW++ G V +W+++  L A+
Sbjct: 159 HGCVNRIRAMP-QNSHICVSWADSGHVQVWDMSSHLNAL 196


>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
           carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
          Length = 897

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -3

Query: 318 CQS*DMGLQFEPDAASHKQNDHRPIVHLPLKAGLVNK-FSGDHRSGHSPLLHSFHRLH 148
           C S D GL   PDA  H  N  + ++ L ++AG VN+  S    +  S   HS   +H
Sbjct: 459 CSSDDDGLSL-PDATMHSVNSTKDVLQL-MEAGEVNRAVSSTSMNNRSSRSHSIFMVH 514


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
            repair and meiosis protein Rad9 [Coprinus cinereus]
            GI:1353390, SP|Q09725 Sister chromatid cohesion protein
            mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 189  NDDRPKTYLPDQPLKEDEQLVCDHSAYVMLHQAQTGAPCLSFDIV 323
            NDDR + Y P +PLK  + L     A+  L + +T  P    D+V
Sbjct: 1632 NDDRCQAYSPTEPLKPGDPLSRQSVAF-DLSETRTDLPSTYQDLV 1675


>At1g07390.1 68414.m00788 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 976

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 207 FSGDHRSGHSPLLHSFHRLHSLNLS 133
           F    RS +  LLHSF +L SLNLS
Sbjct: 66  FESQTRSLNLSLLHSFPQLQSLNLS 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,042
Number of Sequences: 28952
Number of extensions: 253418
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)