Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0449
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.0  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    26   4.2  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   5.6  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    25   5.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   9.7  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 372 NCLDCYC-LYKNLCIRYLYHHCSSLVHNN 289
           N L C+  L  N CI Y Y  CSSL   N
Sbjct: 718 NFLRCFASLLHNCCIFYAYRACSSLFGEN 746


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 414 MNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYH 316
           +N LR H+G  G  N      LY  L I  LYH
Sbjct: 279 LNLLRAHYGKAGSENIAVIKQLYHELQIPELYH 311


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 294 NNHDLGTTSNF*IFFCSFLI*EFIVSFSLLIS 199
           N  ++   ++F IF  S L   +I SFSLLIS
Sbjct: 97  NTFEMALRNDFQIFCTSILFTCYIQSFSLLIS 128


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 384 HGFHNCLDCYCLYKNLCIRYLYHHCSSL 301
           H  H C+       +L ++  Y HCS+L
Sbjct: 4   HYIHQCVKASSCKHSLSVKQRYFHCSAL 31


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 149 GYFAVCSVIGYHLYYYQLISKLNETMNS*MRKEQKKI 259
           GYFA+ S  G+H   Y  I K    +     +E+K++
Sbjct: 407 GYFAMSSFKGHHFSPYSAIFKCVSLIMQQTLREEKQL 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,634,224
Number of Sequences: 5004
Number of extensions: 29485
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)