Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0449
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     36   0.017
SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)                30   1.4  
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)                        30   1.4  
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)                  29   1.9  
SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)            29   2.5  
SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)                   29   3.3  
SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08)                   28   4.4  
SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)                    28   4.4  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   28   4.4  
SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)           27   7.6  
SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)            27   7.6  

>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 471 HDWCCNSFHRY--YNEYHYCMMNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYHHC 310
           H +CC   HRY  Y  +HYC     RHH     +H    CY  Y + C  Y +H+C
Sbjct: 20  HHYCCYCHHRYCYYRHHHYCWY---RHH-----YH--YPCYRHYYHRC--YRHHYC 63


>SB_44298| Best HMM Match : Herpes_US9 (HMM E-Value=8.9)
          Length = 138

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 474 CHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHGFHN 370
           C+    N  HRY++ +H+   +   HHH  H  H+
Sbjct: 34  CYHKLKNPRHRYHHHHHHQHNHHQHHHHHNHHHHH 68


>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
          Length = 165

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
 Frame = -3

Query: 453 SFHRYYNEYHYCMMNSLRHHHGLHGFHNCLDC-------YCLYKNLCI-RYLYHH 313
           S HR    Y YC       H   + +H  L C       +C Y+  C+ RY Y+H
Sbjct: 32  SCHRVCRRYRYCKSFLFIKHKCHYKYHCYLKCSCKVKYYHCRYRRRCVWRYKYYH 86


>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
          Length = 483

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 399 HHHGLHGFHNCLDCYCLYKNLCIRYL-YHHCSSLV 298
           H   L G     DC    KNLC++YL   HC+ LV
Sbjct: 204 HSISLEGCDINHDCIHTLKNLCLKYLNVSHCTKLV 238


>SB_12896| Best HMM Match : Plasmodium_HRP (HMM E-Value=1.1)
          Length = 284

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -3

Query: 444 RYYNEYHYCMMNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNHDLGTT 271
           +Y + Y Y +  +LR  + LH  H      C Y+   I Y YH   +L H  H L TT
Sbjct: 99  KYPSHYTYRIPYTLRIPNTLHTTHTAYRTQCTYR---IPYRYHIRYTL-HVRHTLRTT 152


>SB_20262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 420 NNDTRYNSGGRSYNTSRDRVDESYK--KTYRNESSVNYSN 533
           NND   N+G    N + D  D +Y       N+++ NY N
Sbjct: 111 NNDNNDNNGNNDNNDNNDNYDNNYNNDNNDNNDNNDNYDN 150


>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
          Length = 509

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = -3

Query: 483 HLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLHGFHNC 367
           HL CH    +  HR     HY       HHH     H+C
Sbjct: 368 HLYCHRPRLSYHHRPSRHLHYHRFRLSIHHHPSSRHHHC 406


>SB_33026| Best HMM Match : Ras (HMM E-Value=3.7e-08)
          Length = 155

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 444 RYYNEYHYCMMNSLRHHHGLHGFHNCLD 361
           R+  EY  C+  S RHH  +HG +  +D
Sbjct: 10  RFIGEYDPCLEASYRHHLTVHGQYIAMD 37


>SB_23569| Best HMM Match : PAN (HMM E-Value=0.0015)
          Length = 504

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 420 NNDTRYNSGGRSYNTSRDRVDESYKKTYRNESSVNYSN 533
           NN+   N+   +YN +    + +   TY N ++  Y+N
Sbjct: 443 NNNNNNNNNNNTYNNNNSSNNNNNNNTYNNNNNNTYNN 480


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -3

Query: 474 CHDWCCNSFHRYYNEYHYCMMNS--LRHHHGLHGFHN 370
           C+    N  HRY++ +H+   ++    HHH  H  HN
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHHHHHHN 282


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -3

Query: 447 HRYYNEYHYCMMNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYHHCSSLVHN 292
           H ++  + +   +  RHHH  H  +N    Y    N+ I+ + HH   ++ N
Sbjct: 323 HHHHQRHRHRHRHRHRHHHHHHHEYNRRHRYFTDINITIQIIRHHFIIIIIN 374


>SB_30078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/52 (21%), Positives = 25/52 (48%)
 Frame = -3

Query: 456 NSFHRYYNEYHYCMMNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYHHCSSL 301
           + +HR+ +     ++N +  HH  H + + +    +   + I + YHH  S+
Sbjct: 450 HQYHRHPSISSLSIINIIIIHHQYHHYPSSISSLSIINIIIIHHQYHHHPSI 501


>SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)
          Length = 742

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 432 EYHYCMMNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYHHCS 307
           EY +   N + +   +H F  CL+      +  ++YL  HC+
Sbjct: 422 EYMHFDSNPINYVSFMHNFETCLESLTSDNSRKLQYLIQHCT 463


>SB_50530| Best HMM Match : Pencillinase_R (HMM E-Value=3.3)
          Length = 356

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = -3

Query: 513 FHFDMFFCKIHLLCHDWCCNSFHRYYNEYHYCMMNSLRHHHGLH 382
           +H+D ++   +   +D+  +  + Y+ +YHY       +H+  H
Sbjct: 300 YHYDYYYHYHYYYYYDYHYHYDYHYHYDYHYDYHYDYHYHYDYH 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,461,032
Number of Sequences: 59808
Number of extensions: 208111
Number of successful extensions: 651
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)