Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0449
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    24   3.8  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   5.0  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.8  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 324 LYHHCSSLVHNNHDLG 277
           L HH SS  H+NH LG
Sbjct: 93  LLHHPSSSPHSNHLLG 108


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 471 DRVDESYKKTYRNESSVNYSNRAVWR 548
           +  D +++ T   ++++NY+ R  WR
Sbjct: 114 NNADGNFEVTLATKATLNYTGRVEWR 139


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 408 SLRHHHGLHGFHNCLDCYC 352
           +L HH  +H     L C+C
Sbjct: 424 TLHHHQQVHNQQRILYCFC 442


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,542
Number of Sequences: 2352
Number of extensions: 7138
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)