Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0449
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81064-7|CAB02960.2|  382|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL031621-7|CAE46665.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF040655-4|AAB95046.3|  125|Caenorhabditis elegans Hypothetical ...    27   6.7  
U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fb...    27   8.9  

>Z81064-7|CAB02960.2|  382|Caenorhabditis elegans Hypothetical
           protein F16B12.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -3

Query: 456 NSFHRYYNEYHYCMMNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYHHC 310
           NS H+Y      CM+   +     +G  +C  C   ++ + +  L++ C
Sbjct: 11  NSEHKYVKNQGTCMICPKKASGRHYGVFSCCACKMFFRRVIVENLFYKC 59


>AL031621-7|CAE46665.1|  382|Caenorhabditis elegans Hypothetical
           protein F16B12.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -3

Query: 456 NSFHRYYNEYHYCMMNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYHHC 310
           NS H+Y      CM+   +     +G  +C  C   ++ + +  L++ C
Sbjct: 11  NSEHKYVKNQGTCMICPKKASGRHYGVFSCCACKMFFRRVIVENLFYKC 59


>Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical
           protein T07C12.9 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 507 FDMFFCKIHLLCHDWCCNSFHRYYN 433
           +  F   + + C ++CCN+   YYN
Sbjct: 180 YGQFDAVVTIFCVEYCCNTLSEYYN 204


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 447 HRYYNEYHYCMMNSLRH-HHGLHGFHN 370
           H ++ E+H+   +   H HHG HG H+
Sbjct: 561 HGHHGEHHHAPAHHGHHGHHGSHGVHH 587


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 423 YCMMNSLRHHHGLHGFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNHDLGTTSNF 262
           +  +N + H     G  NCL+   LYKN  +  L  H  S++     L  +SNF
Sbjct: 446 FAFINEIEHIPDF-GEENCLETLILYKNK-LSSLPKHFFSILPRLRQLNISSNF 497


>AF040655-4|AAB95046.3|  125|Caenorhabditis elegans Hypothetical
           protein T24E12.6 protein.
          Length = 125

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 438 NSGGRSYNTSRDRVDESYKKTYRNESSVNYSNRAV 542
           N+    Y  S DRV+  YKK  + ++ + Y   AV
Sbjct: 9   NAMNDHYKRSEDRVEAIYKKFEQRDAKMTYDQNAV 43


>U21319-6|AAC46676.3|  535|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 8 protein.
          Length = 535

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 387 LHGFHNCLDCYCLYKNLCIRYLYHHCSSLVHNNH 286
           LH F     CYC  +N+ I     H  S ++NN+
Sbjct: 81  LHMFGTPPSCYCAQENIPISSNVGHVLSTINNNY 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,874,405
Number of Sequences: 27780
Number of extensions: 163200
Number of successful extensions: 452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)