Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0448
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    31   0.17 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   1.2  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.1  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   2.1  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.8  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   6.4  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.4  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   8.5  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    25   8.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   8.5  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   8.5  

>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
 Frame = +2

Query: 83  SSGLQSTLPRLPFLSTHKKSTASQHRINVLKEQITQSENNLNAQHAV---LIQQQQVKIN 253
           +S ++   P LP+      +TA QH I   +E  T ++ NL  ++A+   L Q   + + 
Sbjct: 174 ASNIELLRPLLPYYKNQILNTAKQHGI-AWEEDPTNADINLTPRNAIRRFLNQHAALTVE 232

Query: 254 ELVSKAQMESLQIMADENNINLSELDNIL 340
                   +SLQ+  D N ++    DNI+
Sbjct: 233 ATKLATAFQSLQVNID-NKVDEILKDNIV 260


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 30  DACSAGSSGLDGGGTCTSAVACSQLCPASPSSAPTRNRQHH 152
           D+  A S    G G   S     Q+ PA P+ APT   +HH
Sbjct: 703 DSIIADSMSPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHH 743


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = +2

Query: 128 THKKSTASQHRINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQM 277
           T++ S +S+H +++   +   +   L  Q   L  Q++ KINE+++   M
Sbjct: 575 TNRSSLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSM 624


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 100 NSAPPPLPQHPQEIDSITTQDQCAERTDYSVRK*SK 207
           +S+PPP+P  P E  S  TQ + +  + +   K  K
Sbjct: 189 SSSPPPIPSIPHETTSSDTQKKSSVSSGFPENKHGK 224


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 503 YLVNDVLHHCARKNAEDLKKNLENVVVAMFC 595
           YL   +L H      E LK+N EN V  + C
Sbjct: 697 YLAESLLEHILGLLIETLKRNTENTVAILKC 727


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = +2

Query: 122 LSTHKKSTASQHRI--NVLKEQITQSENNLNAQHAVLIQQQQVKINEL-VSKAQME-SLQ 289
           L+TH  S      +  N+ ++ ++  E  LN+      QQ++V  +EL V +  +E +  
Sbjct: 425 LTTHPFSVMHNGLLTRNIWEKGLSIIEEQLNSLQPK--QQEKVVDSELEVDENLLEDATM 482

Query: 290 IMADENNINLSELDNILQPIIDSCTKDSI 376
           I  DE++   S L+N L   +DS   + I
Sbjct: 483 IQDDESHEGESHLENSLSEYVDSVPAEEI 511


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 103 SAPPPLPQHPQEIDSITTQDQCAERTDYSVRK*SKCSTCCFDTTAASEDQ*ACQQ 267
           S  PP  +    +D   TQ    E+ D  +       TC  ++++ASEDQ  C+Q
Sbjct: 574 SRTPPKGEFTNSLDDTPTQSN-VEKVDRFLEN-HDWETCS-ESSSASEDQSLCKQ 625


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 353 DSCTKDSISSGKGWILQH 406
           ++C  D +S GK WIL++
Sbjct: 421 ETCVNDILSLGKSWILKN 438


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 387 RVGYFNMLHPMMLAKSYLNT 446
           RVG F +LHP++L K  L +
Sbjct: 557 RVGVFGVLHPLVLEKFELTS 576


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 392  WILQHATSHDAGKVISXHLLRKVTQTGAAFTQKLHIIYLVNDV 520
            W +   T H+   +I   LL ++ +TG    +   + Y +N+V
Sbjct: 1033 WSIPFPTHHNFFSIIPFILLTEILRTGKMLPRLNDVEYYINNV 1075


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 74  LYFSSGLQSTLPRLPFLSTHKKSTASQH 157
           +YF+ G  S  P LP+ S    S + +H
Sbjct: 456 IYFADGNWSDFPSLPYASHRASSVSIKH 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,020
Number of Sequences: 5004
Number of extensions: 41176
Number of successful extensions: 145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)