Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0448
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_58197| Best HMM Match : Ribosomal_L5_C (HMM E-Value=3)              33   0.23 
SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)        31   0.94 
SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    30   1.6  
SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_8383| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_45619| Best HMM Match : M (HMM E-Value=0.01)                        28   5.0  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     28   5.0  
SB_24427| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_17036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              28   6.6  
SB_27594| Best HMM Match : TFIIB (HMM E-Value=4.7e-20)                 28   6.6  
SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)                    27   8.8  
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)             27   8.8  
SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 21/42 (50%), Positives = 30/42 (71%)
 Frame = +2

Query: 470 GAAFTQKLHIIYLVNDVLHHCARKNAEDLKKNLENVVVAMFC 595
           G  F  KLH++Y++ND++HH ARKN  DL   ++ VVV +FC
Sbjct: 9   GLTFPNKLHLVYIINDIVHHAARKNLTDLNSAVKEVVVPVFC 50


>SB_58197| Best HMM Match : Ribosomal_L5_C (HMM E-Value=3)
          Length = 582

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +2

Query: 62  WRRHLYFSSGLQSTLPRLPFLSTHKKSTASQHRINVLKEQITQSENNLNAQHAVLIQQQQ 241
           W R   F+  L         L THK  T  Q+   VL+++I +S N    +  +L  QQ+
Sbjct: 360 WLRRRLFAMSLMRAAQTFCNLMTHKIQTQKQY--YVLEDKIERSSNRPTGRPTILDDQQE 417

Query: 242 VKINELVSKAQMESLQIMAD 301
            ++  L  +     L I  D
Sbjct: 418 AELLTLFEREIKNKLVINKD 437


>SB_46225| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00052)
          Length = 649

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/64 (26%), Positives = 35/64 (54%)
 Frame = +2

Query: 134 KKSTASQHRINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNI 313
           +K     H+I+ LKE+IT  E  L  +H   ++ Q+V+  +   KA+++ ++  A E+  
Sbjct: 290 RKLKIMNHQIDQLKEEITAKEATLVKEH---LEHQRVEKEKDALKAELQRMKQQAAESKA 346

Query: 314 NLSE 325
            + +
Sbjct: 347 YIEQ 350


>SB_34339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 112 PPLPQHPQEIDSITTQDQCAERTDYSVRK 198
           PPLPQ  Q   S+  QDQC ER   + +K
Sbjct: 130 PPLPQEEQ---SVPAQDQCGERQSQATQK 155


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 7/157 (4%)
 Frame = +2

Query: 92   LQSTLPRLPFLSTHKKSTASQ-----HRINVLKEQITQSENNLNA--QHAVLIQQQQVKI 250
            LQ+   RL  L T ++ +  +     H I V K++I++ E  LNA  + A  +Q     +
Sbjct: 1756 LQNARKRLATLETTERKSEEELAKANHEIQVSKDEISRLETELNAAKKRASCLQVDYENV 1815

Query: 251  NELVSKAQMESLQIMADENNINLSELDNILQPIIDSCTKDSISSGKGWILQHATSHDAGK 430
             + +++ +    +  A+E N++LS  + ++        +D I   K  I++  +     K
Sbjct: 1816 RDELAETRRALAE--AEEKNVSLSIQEELVTSKQLDEARDKIFVLKEEIIKADSQLAEHK 1873

Query: 431  VISXHLLRKVTQTGAAFTQKLHIIYLVNDVLHHCARK 541
             IS  L + V++           I  + D L    +K
Sbjct: 1874 GISESLKKTVSKKTEVIEDLNRQIKYLEDELEKVRKK 1910



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/86 (20%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +2

Query: 122  LSTHKKSTASQHRINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMAD 301
            L +HKK+++ +  ++   E + +++NN        I+  +++   + S   ++ ++I  +
Sbjct: 3098 LESHKKASSLECELSTANENLKEAQNNCKDAE---IEVSKLREEIIESHKTIKEMEICIE 3154

Query: 302  ENNINLSELDNILQPIIDSC-TKDSI 376
            EN     +L+  L    D   T DS+
Sbjct: 3155 ENQNKFLQLEQNLVAAKDVLDTSDSM 3180


>SB_14128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1138

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
 Frame = +2

Query: 119 FLSTHKKS-TASQHRINVLKEQITQSENNLNAQHAVLIQQQ-QVKINELVSKAQMESLQI 292
           +L+ HK++ TA QHR  +L+E   + E+N+    A  I+ + Q  + E ++K +   L++
Sbjct: 728 WLTEHKRAETALQHRERLLQESAQKLESNMELLGATGIEDRLQDGVPETIAKLREGGLKV 787


>SB_11522| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/79 (25%), Positives = 42/79 (53%)
 Frame = +2

Query: 104 LPRLPFLSTHKKSTASQHRINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMES 283
           LPR   LS  ++S+ S+HR++     +TQ +N   A+H   ++ +   + ++   A+ + 
Sbjct: 85  LPRRWRLSVTQRSSISRHRLSSASGAVTQ-KNLSGAEHEGSLRMKTELLVQMDGLARSDD 143

Query: 284 LQIMADENNINLSELDNIL 340
           L  +   +N+   ELD+ +
Sbjct: 144 LVFLLAASNLPW-ELDHAM 161


>SB_8383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 141 DFLWVLRKGRRGRVDCKPLLKY 76
           DFL ++++G+  RV C+P  KY
Sbjct: 71  DFLMIVKEGQEMRVSCQPQAKY 92


>SB_58082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 161 INVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADEN 307
           I VLK+   ++ N + A+H +L+  +Q K  E +++   E  ++  D N
Sbjct: 34  IQVLKQLFIKTPNEIFARHLLLLTTRQQKTGETLTEFLQELRRLSKDCN 82


>SB_52463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1184

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 134 KKSTASQHRINVLKEQITQSENNLNAQHAVLIQQQQVK 247
           K S  + + +N++  Q+  +EN +NAQ AV++ Q+ +K
Sbjct: 776 KSSAHTSNNVNIVSGQV--AENIVNAQDAVVVGQKTMK 811


>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
          Length = 1315

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/62 (22%), Positives = 34/62 (54%)
 Frame = +2

Query: 188 QSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNINLSELDNILQPIIDSCTK 367
           + E++   +   + Q +  ++ E + ++Q  +L+  A+EN +   ++D+ L  I+D   K
Sbjct: 608 KEEHDATKEKMEMTQMRVSQLEESLRRSQY-ALEKAAEENQVGWQKIDDNLDKIVDYICK 666

Query: 368 DS 373
           +S
Sbjct: 667 ES 668


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
 Frame = +2

Query: 125 STHKKSTASQHRINVLKE-----QITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQ 289
           ST +    SQH++  L+      Q+TQS N+ N      +Q++Q +I+EL  + ++ S Q
Sbjct: 560 STKEALKLSQHKVTELESSLSVAQLTQSNNDSNTLQQ--LQEKQSRISEL--EQELASNQ 615

Query: 290 IMADENNINLSELDNILQPIID 355
           +  +E   +L      LQ  ++
Sbjct: 616 LSYEELQTDLEFTKAELQSTVE 637


>SB_24427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 242 VKINELVSKAQMESLQIMADENNINLSELDNILQPIIDSCTK 367
           + IN LV    M  + +  DE  I++ +LD ++      C++
Sbjct: 117 IAINVLVKDQGMNVVPVTTDEGGIDVEQLDQLMSKYASICSR 158


>SB_17036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 56  PRWRRHLYFSSGLQSTLPRLPFLSTHKKSTASQHRINVL 172
           P W+  L  ++   S LP+L  + T +K  A Q+R++ L
Sbjct: 13  PGWKGQLRVAALAFSQLPKLDHMHTVRKHEAQQYRVSEL 51


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 6   CNAPTGQRDACSAGSSGLDGGGTCTSAVACSQLCPASPSSAPTR 137
           C  P+  R  C+AG+  L+G   C        +CP S S  P R
Sbjct: 852 CPTPSSPRVPCTAGTYSLEGVAACVDC-PVGYMCP-STSWQPLR 893


>SB_27594| Best HMM Match : TFIIB (HMM E-Value=4.7e-20)
          Length = 305

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
 Frame = +2

Query: 128 THKKSTASQHRINVLKEQITQSENNLNAQ-HAVLIQQQQVKINELVSKAQMESLQIMADE 304
           TH +  A Q   +V+  +ITQ       +   +L  +Q+++  +   KA   S Q   +E
Sbjct: 201 THARKKAKQQAEDVVNPEITQEVEKFRTEIDNILGIRQEIRNQDNTEKAMSPSDQRAGEE 260

Query: 305 N--NINLSELDNILQPIIDSC--TKDSI 376
           +   ++L+ LD++    +D C  T+D I
Sbjct: 261 SGEELDLTGLDDV---ELDKCLLTEDEI 285


>SB_36876| Best HMM Match : ig (HMM E-Value=2.9e-26)
          Length = 1128

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 103  SAPPPLPQHPQEIDSITTQDQCAERTDYS 189
            S PPP   HP+   +I   +QC   T+ S
Sbjct: 952  SGPPPQGTHPRPHSTIRISEQCTSTTNRS 980


>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
          Length = 2822

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 136  LVGAEEGEAGQS*LQATAEVQVPPP--SRPLDPAE 38
            LV A +   G++ +Q T +++VPPP   RP  P E
Sbjct: 1636 LVPAFDPRPGRTNVQQTQDIEVPPPGSKRPSTPEE 1670


>SB_21644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 195 SD*VICSFSTLILCCDAVDFLWVLRKGRRGRVDCKPLLKY 76
           +D V+C+FST +L  D V+F+  L K ++      P+  Y
Sbjct: 203 ADYVVCTFSTGVLASDMVEFVPPLPKWKQEAYLSHPMSIY 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,641,839
Number of Sequences: 59808
Number of extensions: 333681
Number of successful extensions: 1116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)