Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0448
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 91 6e-19
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 91 6e-19
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 34 0.089
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 32 0.27
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 31 0.48
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 29 1.9
U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical pr... 29 2.5
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 29 2.5
AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical... 29 2.5
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 29 3.3
L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein. 29 3.3
AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical... 29 3.3
AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical... 29 3.3
AF024492-7|AAF98618.3| 179|Caenorhabditis elegans Hypothetical ... 28 4.4
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 4.4
Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical pr... 28 5.9
U41037-4|AAA82390.1| 218|Caenorhabditis elegans Hypothetical pr... 28 5.9
AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate cyc... 28 5.9
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 91.1 bits (216), Expect = 6e-19
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Frame = +2
Query: 113 LPFLSTHKKSTASQHRINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQI 292
+P L + + +I+ L+++I SE NLNA + + + + ++ ++
Sbjct: 38 IPSLMDPPEIVEWRKKIDELRQKIIDSEQNLNAHRNGMDELLMAHLKSAIRTSETMKIEK 97
Query: 293 MADENNINLSELDNILQPIID-SCTKDSISSGKGWILQHATSHDAGKVISXHLLRKVTQT 469
M +NN+N+ +L++ L + C+KD IS K WI ++ TS ++I LL KV
Sbjct: 98 MLSQNNLNVEDLNSYLDAMATPKCSKDLISQAKKWIFEYCTSDQLREIILSFLLNKVKDE 157
Query: 470 GAAFTQKLHIIYLVNDVLHHCARKNAEDLKKNLENVVVAMF 592
+ +LHI+YL+ND HC RK E+ K L V M+
Sbjct: 158 ASGEYLRLHILYLINDWAFHCQRKKEENQMKMLARYVPKMY 198
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 91.1 bits (216), Expect = 6e-19
Identities = 48/161 (29%), Positives = 82/161 (50%), Gaps = 1/161 (0%)
Frame = +2
Query: 113 LPFLSTHKKSTASQHRINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQI 292
+P L + + +I+ L+++I SE NLNA + + + + ++ ++
Sbjct: 38 IPSLMDPPEIVEWRKKIDELRQKIIDSEQNLNAHRNGMDELLMAHLKSAIRTSETMKIEK 97
Query: 293 MADENNINLSELDNILQPIID-SCTKDSISSGKGWILQHATSHDAGKVISXHLLRKVTQT 469
M +NN+N+ +L++ L + C+KD IS K WI ++ TS ++I LL KV
Sbjct: 98 MLSQNNLNVEDLNSYLDAMATPKCSKDLISQAKKWIFEYCTSDQLREIILSFLLNKVKDE 157
Query: 470 GAAFTQKLHIIYLVNDVLHHCARKNAEDLKKNLENVVVAMF 592
+ +LHI+YL+ND HC RK E+ K L V M+
Sbjct: 158 ASGEYLRLHILYLINDWAFHCQRKKEENQMKMLARYVPKMY 198
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
protein E01G6.1 protein.
Length = 1391
Score = 33.9 bits (74), Expect = 0.089
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 36 CSAGSSGLDGGGTCTSAVACSQLCPASPSSAPTRNRQHH 152
C +GSS + GG + A S CP S P+ N QHH
Sbjct: 833 CPSGSSVFEYGGRPLACPAGSNKCPQGYSCMPSTNPQHH 871
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 32.3 bits (70), Expect = 0.27
Identities = 25/110 (22%), Positives = 52/110 (47%)
Frame = +2
Query: 227 IQQQQVKINELVSKAQMESLQIMADENNINLSELDNILQPIIDSCTKDSISSGKGWILQH 406
+++++ K + K + + M+D+ L L L P K SI++ W +Q+
Sbjct: 500 MRREEEKERKRREKNEKKRNNRMSDKRRDKLETLIRELTP-----EKTSIAATMVWCIQN 554
Query: 407 ATSHDAGKVISXHLLRKVTQTGAAFTQKLHIIYLVNDVLHHCARKNAEDL 556
A A ++ + +T +K+ +YL+ND+L +C ++N D+
Sbjct: 555 AKY--AAEICEC-VYDSLTIEDIPLYKKISRLYLINDILSNCVQRNVRDV 601
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 31.5 bits (68), Expect = 0.48
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +2
Query: 200 NLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNINLSELD 331
N H V++ Q+V+ N V + ++ +Q +AD N+NL+ +D
Sbjct: 59 NARKLHVVIVIDQKVQKNLRVREMALKDVQKVADTLNVNLTRID 102
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Frame = +2
Query: 95 QSTLPRLPFLSTHKKSTASQHRINVLKEQITQSENNLNAQHAVL--IQQQQVKIN--ELV 262
+ LP + S + T + +++ +I ++N+N + I + + K+N E+V
Sbjct: 567 EENLPPVLLNSNTQPETDFEFQVDTSTSEILSDQSNMNITFEPIEDIAEDRPKLNGEEIV 626
Query: 263 SKAQMESLQIMADENNINLSELDNI 337
MES +NINLSE ++
Sbjct: 627 QVQIMESTSRSTAPSNINLSENSDV 651
>U41278-4|AAK31513.3| 928|Caenorhabditis elegans Hypothetical
protein F33G12.5 protein.
Length = 928
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +2
Query: 158 RINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNINLS---EL 328
R+ + +Q+ + EN+ A H VL Q Q+ + E + + + E L+ M ++ ++ EL
Sbjct: 728 RLEHINQQL-ELENDTIADHVVLYQHQRKLVRERL-RVKDEQLKAMEEDRTKTVARCQEL 785
Query: 329 DNILQPIID 355
N+L +++
Sbjct: 786 QNVLMTVLN 794
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 18 TGQRDACSAGSSGLDGGGTCTSAVACSQLC 107
TG+ +C+ G S G +C A++ +QLC
Sbjct: 1166 TGEPQSCAIGQSTCPSGYSCQRAISGAQLC 1195
>AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical
protein H20J04.1 protein.
Length = 843
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Frame = +2
Query: 116 PFLSTHKKSTASQHRINVLKEQITQSENNLN--AQHAVLIQQQQVKINELVSKAQMESLQ 289
PF S S H I +++ +N LN + + +KI +L L+
Sbjct: 272 PFFSNVLSYLESSHAIKFIEKLTNADKNTLNDLRKWTGAFPDELLKIEDLKRDINETFLK 331
Query: 290 IMADENNINLSELDNILQPIIDS 358
E+N L L LQP+ DS
Sbjct: 332 ETLTEDNSPLDALLKTLQPLFDS 354
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 224 LIQQQQVKINELVSKAQMESLQIMADENNINLSE 325
L+ QQQ KINELV Q + + INL++
Sbjct: 774 LLTQQQAKINELVKLIQKNHDTLREQQQQINLAK 807
>L46861-1|AAA74747.1| 2553|Caenorhabditis elegans talin protein.
Length = 2553
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 140 STASQHRINVLKEQITQSENNL--NAQHAVLIQQQQVKINE 256
+ A Q +++ ++TQS NNL +A+HAV Q I+E
Sbjct: 761 NNACQQQLSTAATEVTQSVNNLLHDAEHAVYQQSSLTDIHE 801
>AC025726-18|AAK73910.1| 996|Caenorhabditis elegans Hypothetical
protein Y71G12B.11b protein.
Length = 996
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 140 STASQHRINVLKEQITQSENNL--NAQHAVLIQQQQVKINE 256
+ A Q +++ ++TQS NNL +A+HAV Q I+E
Sbjct: 761 NNACQQQLSTAATEVTQSVNNLLHDAEHAVYQQSSLTDIHE 801
>AC025726-17|AAK73909.2| 2553|Caenorhabditis elegans Hypothetical
protein Y71G12B.11a protein.
Length = 2553
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 140 STASQHRINVLKEQITQSENNL--NAQHAVLIQQQQVKINE 256
+ A Q +++ ++TQS NNL +A+HAV Q I+E
Sbjct: 761 NNACQQQLSTAATEVTQSVNNLLHDAEHAVYQQSSLTDIHE 801
>AF024492-7|AAF98618.3| 179|Caenorhabditis elegans Hypothetical
protein F14F9.6 protein.
Length = 179
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 134 KKSTASQHRINVLKEQITQSENNLNAQHAVLIQ-QQQVKINELVSKAQMESLQIMADEN 307
+ S S N+L E +T + L Q + Q + KI + K QME Q + +EN
Sbjct: 2 ESSGKSSANANLLAETLTTMQAQLQTQTEISQQVMEDNKIRSALLKQQMEMSQALLEEN 60
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +3
Query: 93 CSQLCPASPSSAPTRNRQHHN-TGSM 167
C+ P +P +AP+ + QHHN TG++
Sbjct: 360 CASAPPVAPPTAPSTSFQHHNSTGNL 385
>Z81114-4|CAB03288.2| 688|Caenorhabditis elegans Hypothetical
protein T04D3.4 protein.
Length = 688
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 230 QQQQVKINELVSKAQMESLQIMADENNINLSELDNILQPIIDSCTKDSISSGK 388
+ QV++N + + + L+ MA E I + D +L ++ + DS+ SGK
Sbjct: 362 RMSQVELNRTLEETT-KKLKKMAQELEIEKQKTDELLCELMPASVADSLRSGK 413
>U41037-4|AAA82390.1| 218|Caenorhabditis elegans Hypothetical
protein T24C12.4 protein.
Length = 218
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 272 QMESLQIMADENNINLSELDNILQPIIDSCTKDSISS 382
Q+ L+ + E+NI +SEL L C D ISS
Sbjct: 56 QISQLKPLYKEDNITISELSTALGAAFPPCCSDIISS 92
>AY652944-1|AAT73711.1| 688|Caenorhabditis elegans guanylate
cyclase-like protein protein.
Length = 688
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +2
Query: 230 QQQQVKINELVSKAQMESLQIMADENNINLSELDNILQPIIDSCTKDSISSGK 388
+ QV++N + + + L+ MA E I + D +L ++ + DS+ SGK
Sbjct: 362 RMSQVELNRTLEETT-KKLKKMAQELEIEKQKTDELLCELMPASVADSLRSGK 413
>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/75 (20%), Positives = 39/75 (52%)
Frame = +2
Query: 149 SQHRINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNINLSEL 328
++ + VLKEQ+ ++++ L + + Q+ KI EL + ++++ Q + E +E+
Sbjct: 393 AEKEVKVLKEQLERAQSALESSQELASSQKADKIQEL--EKELQNAQKRSSEELETANEM 450
Query: 329 DNILQPIIDSCTKDS 373
L +++ ++
Sbjct: 451 VRSLTATLENSNSET 465
>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
protein F59A2.6 protein.
Length = 1133
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/75 (20%), Positives = 39/75 (52%)
Frame = +2
Query: 149 SQHRINVLKEQITQSENNLNAQHAVLIQQQQVKINELVSKAQMESLQIMADENNINLSEL 328
++ + VLKEQ+ ++++ L + + Q+ KI EL + ++++ Q + E +E+
Sbjct: 393 AEKEVKVLKEQLERAQSALESSQELASSQKADKIQEL--EKELQNAQKRSSEELETANEM 450
Query: 329 DNILQPIIDSCTKDS 373
L +++ ++
Sbjct: 451 VRSLTATLENSNSET 465
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,793
Number of Sequences: 27780
Number of extensions: 251561
Number of successful extensions: 1044
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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