Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0445
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 28 0.52
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 1.6
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 26 2.8
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 2.8
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 3.7
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 25 3.7
SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr 1||... 25 4.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 6.4
SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces pombe... 25 6.4
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 6.4
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 24 8.5
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 28.3 bits (60), Expect = 0.52
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -3
Query: 286 SFRNVIHFSPSILSFYKFHWVIRKYILP 203
S N +H+ + ++ ++FHW +Y++P
Sbjct: 277 SLTNTLHYLNNGVTMFRFHWRKNEYLIP 304
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 1.6
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -2
Query: 266 FLSIDLELLQISLGDSQIHLAVLLILIMYLP----VDVIARKQFIFTNIVFSQLLH 111
FL +DL + S++H+ ++ ++ YLP DV+ R F+F +++ Q H
Sbjct: 462 FLRLDLSPGMLDRPFSRLHVENIIQILRYLPEVKWFDVV-RSPFVFLCLMYLQTSH 516
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 25.8 bits (54), Expect = 2.8
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = +1
Query: 334 YNLSYIYYWYHWTQWL 381
YN Y Y Y+W WL
Sbjct: 1211 YNFEYEYITYNWPHWL 1226
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 409 LGRKKHSIIQATESNGTSSKCKI 341
L KK + QATE+N T SK K+
Sbjct: 452 LSSKKTANSQATENNNTPSKAKV 474
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.4 bits (53), Expect = 3.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 138 CKYELFTCNNVDW 176
C+ ELF C N DW
Sbjct: 601 CQSELFNCENSDW 613
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 25.4 bits (53), Expect = 3.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 319 IVHWRSVY*FPSFRNVIHFSPSILS 245
+VHW FP ++I F P +S
Sbjct: 479 VVHWEEACGFPDVTHIIDFGPGGIS 503
>SPAC1782.12c |||DUF423 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 118
Score = 25.0 bits (52), Expect = 4.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 315 SIGALYINFHRLETLSISLH 256
S Y+ FH L T+++SLH
Sbjct: 39 STACTYLMFHSLATMAVSLH 58
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 272 YPFLSIDLELLQISLGDS 219
YPFLS L+ L +SLG S
Sbjct: 508 YPFLSSTLQPLYVSLGPS 525
>SPCC1281.03c |||DUF1077 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 193
Score = 24.6 bits (51), Expect = 6.4
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Frame = +1
Query: 55 EHSFQFVPQIHEN*VLAIKCNN*LK------TMFVNMNCLRAITSTGRYIIKIKST 204
E ++ + QI N +LA N L+ T+ + +N L+AITSTG K T
Sbjct: 77 ELAYSPLKQIPMNAILAYMSGNSLQIFSIMTTLMLLVNPLKAITSTGSAFTPFKGT 132
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 24.6 bits (51), Expect = 6.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1
Query: 298 IQSANGQCXKLCYNLSYIY 354
IQ Q LCYNL Y+Y
Sbjct: 753 IQMPPDQFQTLCYNLCYVY 771
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 24.2 bits (50), Expect = 8.5
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +2
Query: 212 VFANHPMKFVEAQDRWREMDNVSKRWKLIYRAPMDN 319
+ +++P+ F ++ + N S RW L+ DN
Sbjct: 82 LLSDYPLAFNSTENNQKLQTNPSARWSLLDSMDFDN 117
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,510
Number of Sequences: 5004
Number of extensions: 32504
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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