Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0445
         (423 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999...    29   2.0  
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    28   2.7  
04_04_1693 + 35404336-35404515,35405732-35406019,35406189-354062...    27   4.7  

>06_03_0032 -
           15697530-15697669,15699215-15699437,15699823-15699929,
           15700047-15700224,15700393-15700455,15700474-15700602,
           15701211-15701430,15702162-15702262,15702954-15703062,
           15705169-15705290,15705473-15705515,15705848-15705903,
           15705983-15706089,15706167-15706342,15706507-15706618,
           15706711-15706759,15707184-15707276,15707452-15707571,
           15707686-15707787,15709442-15709540,15710103-15710237,
           15710421-15710499,15710747-15710822,15710904-15710993,
           15711139-15711217,15711304-15711338,15711457-15711531,
           15712628-15713375
          Length = 1221

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 403 RKKHSIIQATESNGTSSKCKISCNKV*XIVHWRS 302
           R + S++    SNG SSK + SC+    ++HWR+
Sbjct: 676 RARESVLFDMSSNGESSKRRNSCS----VIHWRA 705


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 305 LCILISIV*KRYPFLSIDLELLQ-ISLGDSQIHLAVLLILIMYLPVDVIARKQFIFTNI 132
           L I + ++ K +   S D  L++ I LGD  +H  V  +   + P +++ R   + TN+
Sbjct: 252 LNIQVGLIRKAWKHPSADSLLVEEIDLGDGNVHQVVSGLAKFFSPEELVNRHVVLITNV 310


>04_04_1693 +
           35404336-35404515,35405732-35406019,35406189-35406278,
           35406487-35406564,35406638-35406718,35407300-35407350,
           35407788-35407933,35408169-35408235,35408328-35408387,
           35408472-35408501,35408776-35408835,35408936-35409052,
           35409790-35409903,35410068-35410166,35410572-35410697,
           35410774-35410848,35410958-35411029,35411167-35411277,
           35411760-35411843,35413149-35413256,35414207-35414308,
           35414393-35414455,35414524-35414598,35414901-35414972,
           35415063-35415187,35415251-35415302,35415380-35415448,
           35415525-35415540,35415941-35415989,35416607-35417180
          Length = 1077

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -3

Query: 265 FSPSILSFYKF-HWVIRKYILPCF*F*LCTFQSTLLHVNNSYLQTLFSVS 119
           F P +L F++  H ++RK  L C    +    + L    + YLQ LF+++
Sbjct: 180 FMPRLLQFFQSTHAILRKLALGCINQYIVVMPAALYMSMDQYLQGLFNLA 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,020,908
Number of Sequences: 37544
Number of extensions: 176319
Number of successful extensions: 341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)