Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0445
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)                 27   4.8  
SB_33736| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-35)                 27   4.8  
SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)                 27   8.5  
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 27   8.5  
SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
          Length = 1158

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 285  RLETLSISLHRS*ASTNFIG*FANTSCRAFNFDYVPSSRRYCT*TIHIYKHCFQSVI 115
            +  TL +SL  S  +  FIG   + +C A  F Y PS++  C  +  IY+    S I
Sbjct: 885  KTNTLLVSLAISDLNLGFIGIPTSVACNA--FVYYPSTQGLCITSAVIYRFIAVSTI 939


>SB_33736| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-35)
          Length = 368

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 285 RLETLSISLHRS*ASTNFIG*FANTSCRAFNFDYVPSSRRYCT*TIHIYKHCFQSVI 115
           +  TL +SL  S  +  FIG   + +C A  F Y PS++  C  +  IY+    S I
Sbjct: 65  KTNTLLVSLAISDLNLGFIGIPTSVACNA--FVYYPSTQGLCITSAVIYRFIAVSTI 119


>SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)
          Length = 538

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 328 LCYNLSYIYYWYHWTQWLVL 387
           LCY+L + YY Y    WL L
Sbjct: 415 LCYSLRFFYYSYCTRPWLFL 434


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 289 PSFRNVIHFSPSILSFYKFHWVIRKYILPCF 197
           PS+ + + F   I S+Y F W+ R  IL CF
Sbjct: 117 PSYCSELLFRVVIPSYY-FEWLFRVVILSCF 146



 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 289 PSFRNVIHFSPSILSFYKFHWVIRKYILPCF 197
           PS+ + + F   I S+Y F W+ R  IL CF
Sbjct: 251 PSYCSELLFRVVIPSYY-FEWLFRVVILSCF 280


>SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +1

Query: 217 CESPNEICRSSRSMERNG*RF*TMEINIQSANGQC--XKLCYNLSYIY 354
           C++   ICR+ +    N  RF T    + +  G C    LC+ +   Y
Sbjct: 577 CQTDTSICRNGKCSGGNPNRFPTSTTTLAAVTGVCSMLMLCFGILLCY 624


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,049,091
Number of Sequences: 59808
Number of extensions: 218996
Number of successful extensions: 493
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)