Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0445
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02875.1 68416.m00281 IAA-amino acid hydrolase 1 (ILR1) ident...    27   6.9  
At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta...    26   9.1  

>At3g02875.1 68416.m00281 IAA-amino acid hydrolase 1 (ILR1)
           identical to IAA-amino acid hydrolase 1 (ILR1)
           [Arabidopsis thaliana] SWISS-PROT:P54968
          Length = 442

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 94  NFHEFGVQIGNYALNFFTLKFK 29
           NFH+F V +G    +FFT K K
Sbjct: 360 NFHDFPVTMGGEDFSFFTQKTK 381


>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
           putative (RPN9) similar to 26S proteasome subunit p40.5
           [Homo sapiens] gi|3618343|dbj|BAA33214
          Length = 386

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 173 LEGT*SKLKARQDVFANHPMKFVEAQ 250
           LEG   KLKA ++   N P+ ++E Q
Sbjct: 96  LEGVIEKLKATKESRINEPISYIETQ 121


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,539,981
Number of Sequences: 28952
Number of extensions: 156894
Number of successful extensions: 316
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)