Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0444
(638 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q17P98 Cluster: Mediator of RNA polymerase II transcrip... 130 3e-29
UniRef50_Q9VBQ9 Cluster: Mediator of RNA polymerase II transcrip... 122 1e-26
UniRef50_Q9H204 Cluster: Mediator of RNA polymerase II transcrip... 91 3e-17
UniRef50_UPI00005841FD Cluster: PREDICTED: hypothetical protein;... 74 3e-12
UniRef50_A7S0P6 Cluster: Predicted protein; n=1; Nematostella ve... 53 7e-06
UniRef50_Q86F03 Cluster: Clone ZZD1240 mRNA sequence; n=1; Schis... 40 0.038
UniRef50_A0BCM0 Cluster: Chromosome undetermined scaffold_10, wh... 37 0.36
UniRef50_A3W9X8 Cluster: LipQ; n=1; Erythrobacter sp. NAP1|Rep: ... 35 1.9
UniRef50_Q5B0K3 Cluster: Putative uncharacterized protein; n=1; ... 34 2.5
UniRef50_A5DPX5 Cluster: Putative uncharacterized protein; n=1; ... 34 2.5
UniRef50_Q63WE9 Cluster: Putative uncharacterized protein; n=2; ... 34 3.3
UniRef50_A4LZ35 Cluster: Sensor protein; n=1; Geobacter bemidjie... 34 3.3
UniRef50_Q4Q382 Cluster: Putative uncharacterized protein; n=3; ... 34 3.3
UniRef50_Q16LX1 Cluster: Ubiquitin-protein ligase; n=4; Coelomat... 33 4.4
>UniRef50_Q17P98 Cluster: Mediator of RNA polymerase II
transcription subunit 28; n=3; Endopterygota|Rep:
Mediator of RNA polymerase II transcription subunit 28 -
Aedes aegypti (Yellowfever mosquito)
Length = 184
Score = 130 bits (314), Expect = 3e-29
Identities = 65/121 (53%), Positives = 90/121 (74%), Gaps = 4/121 (3%)
Frame = +3
Query: 63 MAAPSNGSGNLVEEFEESFQACLNVLTKQEASPCAXXXXXXXXXX----RFIDLARQMEA 230
MA+ SN +GNLV+E EE+FQ+C++ LTK+E++ +FIDLARQMEA
Sbjct: 1 MASSSNVNGNLVDELEEAFQSCIHALTKEESATGVDKDEIKLEVDQTTLKFIDLARQMEA 60
Query: 231 FFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADLQGHTGYN 410
FFLQKRFLLSA+KP+LL++E+N +LK E+ RK+EL+R+HY+KI W++LL+D Q YN
Sbjct: 61 FFLQKRFLLSALKPDLLLKEENFDLKQEIARKDELIRKHYEKIESWKNLLSDQQ---NYN 117
Query: 411 K 413
K
Sbjct: 118 K 118
>UniRef50_Q9VBQ9 Cluster: Mediator of RNA polymerase II
transcription subunit 28; n=2; Sophophora|Rep: Mediator
of RNA polymerase II transcription subunit 28 -
Drosophila melanogaster (Fruit fly)
Length = 189
Score = 122 bits (293), Expect = 1e-26
Identities = 56/114 (49%), Positives = 83/114 (72%), Gaps = 4/114 (3%)
Frame = +3
Query: 63 MAAPSNGSGNLVEEFEESFQACLNVLTKQEASPCAXXXXXXXXXX----RFIDLARQMEA 230
MA+ +G GNL++EFEE+FQ+CL LTKQE + RFID+ARQMEA
Sbjct: 1 MASNESGGGNLMDEFEEAFQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNRFIDVARQMEA 60
Query: 231 FFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
FFLQKRFL+S +KP +L++++N +L E+QRKE LL++HY+++ +W++ L+D+Q
Sbjct: 61 FFLQKRFLVSTLKPYMLIKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114
>UniRef50_Q9H204 Cluster: Mediator of RNA polymerase II
transcription subunit 28; n=23; Euteleostomi|Rep:
Mediator of RNA polymerase II transcription subunit 28 -
Homo sapiens (Human)
Length = 178
Score = 90.6 bits (215), Expect = 3e-17
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Frame = +3
Query: 69 APSNGSGNLVEEFEESFQACLNVLTKQE----ASPCAXXXXXXXXXXRFIDLARQMEAFF 236
AP S LV+E E SF+AC L Q+ +F+D+ARQ E FF
Sbjct: 36 APRPSSSTLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFF 95
Query: 237 LQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADL 389
LQKR LS KPE +++ED +EL+ ELQRK+ L+++H K+ WQ +L D+
Sbjct: 96 LQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDI 146
>UniRef50_UPI00005841FD Cluster: PREDICTED: hypothetical protein;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
hypothetical protein - Strongylocentrotus purpuratus
Length = 211
Score = 74.1 bits (174), Expect = 3e-12
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 4/105 (3%)
Frame = +3
Query: 90 NLVEEFEESFQACLNVLTKQE----ASPCAXXXXXXXXXXRFIDLARQMEAFFLQKRFLL 257
+LV+E E +F+ACL+ L QE + R+ +LA++ E FFLQ++ L+
Sbjct: 12 HLVDELEAAFKACLSPLVAQENVHVSDQVELKTSVDQSMQRYQELAKETENFFLQRQMLM 71
Query: 258 SAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
+ KPE +++E+ +ELK EL RK LL++ K+ W +L L+
Sbjct: 72 ATTKPESIIKEEIDELKAELTRKNALLQKQQTKVNNWLGILQSLE 116
>UniRef50_A7S0P6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 133
Score = 52.8 bits (121), Expect = 7e-06
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Frame = +3
Query: 90 NLVEEFEESFQACLNVLTKQEASPCAXXXXXXXXXX-----RFIDLARQMEAFFLQKRFL 254
+LV E S Q+C+++L E +F+ A+ +EA FL K+
Sbjct: 4 DLVSSLESSLQSCVSLLLSNEGIEKGQHHNDNTKGVEFTITKFLKNAQALEADFLNKQMY 63
Query: 255 LSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
+ +P+ +++ LK EL +KEELL + +++ W +L DLQ
Sbjct: 64 IRLNQPQETTKQEVGHLKTELAQKEELLNKLSERVDYWNKILDDLQ 109
>UniRef50_Q86F03 Cluster: Clone ZZD1240 mRNA sequence; n=1;
Schistosoma japonicum|Rep: Clone ZZD1240 mRNA sequence -
Schistosoma japonicum (Blood fluke)
Length = 102
Score = 40.3 bits (90), Expect = 0.038
Identities = 19/59 (32%), Positives = 34/59 (57%)
Frame = +3
Query: 204 IDLARQMEAFFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLL 380
+D RQM+++F++KR LS E ++E+ + L E RKE+L++ +I + L
Sbjct: 29 LDACRQMDSWFIKKRLALSTYCQEYALKEEIDALNAECTRKEKLVQEVKSRIEDYSKSL 87
>UniRef50_A0BCM0 Cluster: Chromosome undetermined scaffold_10, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_10,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1328
Score = 37.1 bits (82), Expect = 0.36
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 297 NELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
NEL+ E+QRKE+L++ DK Q + L++DLQ
Sbjct: 452 NELQLEIQRKEQLIKNWKDKYLQSEQLVSDLQ 483
>UniRef50_A3W9X8 Cluster: LipQ; n=1; Erythrobacter sp. NAP1|Rep:
LipQ - Erythrobacter sp. NAP1
Length = 357
Score = 34.7 bits (76), Expect = 1.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 116 FSSLSE-CVDEARSFTMRRKGGSQSRGRTIHRSRQTDGSILPAEKISSIRY 265
FS LSE C E R +R+GG + RG + T S +PA+ ++ Y
Sbjct: 61 FSELSESCASEIRERVQQRRGGREGRGNREGQQPDTSASYVPAKVSHTVIY 111
>UniRef50_Q5B0K3 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 824
Score = 34.3 bits (75), Expect = 2.5
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 213 ARQMEAFFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLA 383
A +ME +L+ R +L A + + L+++DN EL R + RRHYD W ++LA
Sbjct: 138 AVEMELAWLKDRTVL-AERVQRLLKQDNIAFAAELVRTAQ--RRHYDTQGAWNAILA 191
>UniRef50_A5DPX5 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 413
Score = 34.3 bits (75), Expect = 2.5
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = -1
Query: 212 EIDESFYLYFDFLLFGAW*SFLLRQHIQTSLKRFFKFFNQIAATIRRCRHFITHISFPWI 33
E+ SF + D+ S LL H+Q SL +FF F + ++IRR + HI +I
Sbjct: 269 ELSSSFQVLLDWFP-----STLLLSHLQLSLSQFFSLFFRQKSSIRRTGPIVNHIRHIFI 323
Query: 32 KTTSSD 15
SD
Sbjct: 324 HLCLSD 329
>UniRef50_Q63WE9 Cluster: Putative uncharacterized protein; n=2;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia pseudomallei (Pseudomonas pseudomallei)
Length = 158
Score = 33.9 bits (74), Expect = 3.3
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 152 SFTMRRKGGSQSRGRTIHRSRQTDGSILPAEKIS-SIRYET*TPGQR 289
+FT R+ GS RGR R R +PA + S S+R+E PG R
Sbjct: 48 TFTKRKSSGSGMRGRRSRRGRPIRCRPIPAARASVSVRFERIEPGTR 94
>UniRef50_A4LZ35 Cluster: Sensor protein; n=1; Geobacter
bemidjiensis Bem|Rep: Sensor protein - Geobacter
bemidjiensis Bem
Length = 1184
Score = 33.9 bits (74), Expect = 3.3
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +3
Query: 207 DLARQMEAFFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRH 347
DLARQM A+ + RF+L A+ LVRE + L+ L +K +LR H
Sbjct: 853 DLARQMLAYSGKGRFVLEALDLNRLVREMTSMLEVSLSKK-AVLRFH 898
>UniRef50_Q4Q382 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 475
Score = 33.9 bits (74), Expect = 3.3
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 240 QKRFLLSAMKPELLVRED-NNELKCELQRKEELLRRHYDKITQWQSLL 380
Q + + +K E+ E+ +C L +EELL +H +I QWQSLL
Sbjct: 194 QSADMCAKLKTEIEALEEVKRACECRLNLQEELLLQHDAQIRQWQSLL 241
>UniRef50_Q16LX1 Cluster: Ubiquitin-protein ligase; n=4;
Coelomata|Rep: Ubiquitin-protein ligase - Aedes aegypti
(Yellowfever mosquito)
Length = 1082
Score = 33.5 bits (73), Expect = 4.4
Identities = 22/49 (44%), Positives = 25/49 (51%)
Frame = -2
Query: 238 RKNASICLARSMNRSTSTLTSSFSAHGEASCFVNTFRQA*KDSSNSSTK 92
R +ASIC RS TST SS SA G ASC T +D +S K
Sbjct: 47 RSSASICENRS---KTSTRPSSASASGSASCSTATVSTGSEDMKRASAK 92
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,731,229
Number of Sequences: 1657284
Number of extensions: 7572774
Number of successful extensions: 24367
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24356
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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