Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0444
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    26   5.3  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.0  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   9.2  
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo...    25   9.2  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   9.2  

>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 235 KNASICLARSMNRSTSTLTSSFSAHGEASCFVNTF 131
           K  ++   +++  +   LTSSFS++GE   F   F
Sbjct: 9   KRITLFQVKAIEENIDRLTSSFSSNGELVVFATAF 43


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 18  TGCCFYPRKTYVSDKMAAPSNGSGNL-VEEFEESFQACLNVLTKQ 149
           +GC F P +++   K   PS+   N+ ++ + +S+     V T++
Sbjct: 165 SGCLFDPDESFDGSKAELPSSEIANIYIDAYFKSYNPLFPVFTRE 209


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 202 NRSTSTLTSSFSAHGEASCFVNTF 131
           NRS+STL   F      SCF N F
Sbjct: 148 NRSSSTLKDKFFKVFSMSCFKNLF 171


>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 231 FFLQKRFLLSAMKPEL 278
           FFL++R+ LS++KP L
Sbjct: 97  FFLKQRYALSSLKPHL 112


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 150 LASSTHSD-KLEKILQILQPNCRYHSKVPPFYHSH 49
           L S T S+ +L ++      N +  SK+PP+Y +H
Sbjct: 480 LPSPTSSNSRLPRVRSACTLNVQELSKIPPYYEAH 514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,960,590
Number of Sequences: 5004
Number of extensions: 32490
Number of successful extensions: 109
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)