Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0444
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0984 - 21432119-21432157,21432722-21434068                       28   5.4  
07_01_1092 + 10022230-10022575,10023264-10023410,10023935-10024038     28   7.2  
03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748     28   7.2  
06_03_0818 - 24963652-24964983                                         27   9.5  
05_02_0026 + 5716467-5716655,5716833-5718797                           27   9.5  

>04_03_0984 - 21432119-21432157,21432722-21434068
          Length = 461

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 633 AVVAARLAAGERPAERQPQLPSA 565
           A +A RLAAG RPA   P  P+A
Sbjct: 134 AALAPRLAAGLRPARSSPAAPAA 156


>07_01_1092 + 10022230-10022575,10023264-10023410,10023935-10024038
          Length = 198

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 485 CTAKRSDSASGVAASATLRRATKRSGSADGSC 580
           C + R    SGVAA+AT R    R+  A  SC
Sbjct: 18  CESARGREGSGVAATATGRGVGARAAVATSSC 49


>03_05_0560 + 25636969-25637227,25637744-25637793,25637813-25638748
          Length = 414

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 179 FLLFGAW*SFLLRQHIQTSLKRFFKFFNQIAATIRRCR 66
           + LFG      +R H+   L++ +  F  IAA + +CR
Sbjct: 196 YFLFGPREISAMRNHVPVHLRQSYTTFELIAAAVWKCR 233


>06_03_0818 - 24963652-24964983
          Length = 443

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 630 VVAARLAAGERPAERQPQLPSAEPE 556
           +V A LAA    AE +P+LP+AE E
Sbjct: 9   LVVAVLAAAAAAAESEPRLPAAEQE 33


>05_02_0026 + 5716467-5716655,5716833-5718797
          Length = 717

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 20/62 (32%), Positives = 34/62 (54%)
 Frame = +3

Query: 207 DLARQMEAFFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLAD 386
           D+  QME+F  +  F+L  M   L+  +D   L C L+RK + +    + IT  +++L D
Sbjct: 431 DMIEQMESF--EFVFVLHLMIRVLIWTDD---LSCLLERKGKYIVNPLELITSVKNILQD 485

Query: 387 LQ 392
           L+
Sbjct: 486 LK 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,173
Number of Sequences: 37544
Number of extensions: 225092
Number of successful extensions: 748
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)