Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0444
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   3e-06
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)                   33   0.26 
SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)                    31   1.0  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     28   7.4  
SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)                  27   9.7  

>SB_9398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/65 (33%), Positives = 39/65 (60%)
 Frame = +3

Query: 198 RFIDLARQMEAFFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSL 377
           +F+  A+ +EA FL K+  +   +P+   +++   LK EL +KEELL +  +++  W  +
Sbjct: 695 KFLKNAQALEADFLNKQMYIRLNQPQETTKQEVGHLKTELAQKEELLNKLSERVDYWNKI 754

Query: 378 LADLQ 392
           L DLQ
Sbjct: 755 LDDLQ 759


>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
          Length = 1003

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 171  FRRMVKLLASSTHSDKLEKILQILQPNCRYHSKVPPFYHS 52
            FRR  + + S+ +   + ++L + QP   YH KVP   HS
Sbjct: 964  FRRNRRQIISTPNDQSMSQVLLLYQPFLNYHQKVPTTPHS 1003


>SB_38344| Best HMM Match : PX (HMM E-Value=8.1e-21)
          Length = 632

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = -2

Query: 247 LFCRKNASICLARSMNRSTSTLTSSFSAHGEASCFVNTFRQA*KDSSNSSTKLPL 83
           LF +K   +C A+  +     L SSF    E    V+  RQ  +DSS+S  KLP+
Sbjct: 146 LFVKK---LCHAKEHHLEYEDLVSSFRVTAEQQLSVSMERQLSQDSSSSLRKLPI 197


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -2

Query: 259  DRRNLFCRKNASICLARSMNRSTSTLTSSFSAHGEASCFVNTF 131
            DR  LF   N      RS N  T+  T  F+ HG   C  N F
Sbjct: 1378 DRTRLFTGSNDQT--VRSYNVKTAVCTHKFTFHGRVMCLHNAF 1418


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = +3

Query: 288  EDNNELKCELQRKEELLRRHYDKITQWQSLLAD 386
            E   E+K  ++ +++LL   Y K+T+ ++++A+
Sbjct: 2311 EQTEEMKMMMEEQQKLLEDQYGKLTEQETIIAE 2343


>SB_24373| Best HMM Match : Skb1 (HMM E-Value=1.6e-05)
          Length = 494

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +3

Query: 234 FLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKIT------QWQSLLADLQG 395
           F  + F    +KP  L  +   +L   L+RK E +R   DK+       +WQ+   D Q 
Sbjct: 400 FHWESFFFPFLKPISLDSKGTKKLLFSLKRKLERVRDREDKLIKLKLWYEWQAYSEDFQE 459

Query: 396 HTGYNKC 416
            +   KC
Sbjct: 460 KSSKKKC 466


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,159,713
Number of Sequences: 59808
Number of extensions: 239979
Number of successful extensions: 759
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)