Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0444
(638 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011936-1|AAH11936.1| 178|Homo sapiens mediator of RNA polymer... 91 4e-18
AF358829-1|AAK32724.1| 178|Homo sapiens tumor angiogenesis mark... 91 4e-18
AF321617-1|AAG38612.1| 178|Homo sapiens unknown protein. 91 4e-18
AF317680-1|AAK11563.1| 193|Homo sapiens tumor-related protein p... 91 4e-18
AK091549-1|BAC03690.1| 623|Homo sapiens protein ( Homo sapiens ... 30 6.0
AF332010-1|AAO32947.1| 676|Homo sapiens CDV-1R variant b protein. 30 6.0
AF250326-1|AAL50343.1| 676|Homo sapiens CDV-1R protein. 30 6.0
AF139540-1|AAP97269.1| 676|Homo sapiens CDV protein protein. 30 6.0
>BC011936-1|AAH11936.1| 178|Homo sapiens mediator of RNA polymerase
II transcription, subunit 28 homolog (S. cerevisiae)
protein.
Length = 178
Score = 90.6 bits (215), Expect = 4e-18
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Frame = +3
Query: 69 APSNGSGNLVEEFEESFQACLNVLTKQE----ASPCAXXXXXXXXXXRFIDLARQMEAFF 236
AP S LV+E E SF+AC L Q+ +F+D+ARQ E FF
Sbjct: 36 APRPSSSTLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFF 95
Query: 237 LQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADL 389
LQKR LS KPE +++ED +EL+ ELQRK+ L+++H K+ WQ +L D+
Sbjct: 96 LQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDI 146
>AF358829-1|AAK32724.1| 178|Homo sapiens tumor angiogenesis marker
protein.
Length = 178
Score = 90.6 bits (215), Expect = 4e-18
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Frame = +3
Query: 69 APSNGSGNLVEEFEESFQACLNVLTKQE----ASPCAXXXXXXXXXXRFIDLARQMEAFF 236
AP S LV+E E SF+AC L Q+ +F+D+ARQ E FF
Sbjct: 36 APRPSSSTLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFF 95
Query: 237 LQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADL 389
LQKR LS KPE +++ED +EL+ ELQRK+ L+++H K+ WQ +L D+
Sbjct: 96 LQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDI 146
>AF321617-1|AAG38612.1| 178|Homo sapiens unknown protein.
Length = 178
Score = 90.6 bits (215), Expect = 4e-18
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Frame = +3
Query: 69 APSNGSGNLVEEFEESFQACLNVLTKQE----ASPCAXXXXXXXXXXRFIDLARQMEAFF 236
AP S LV+E E SF+AC L Q+ +F+D+ARQ E FF
Sbjct: 36 APRPSSSTLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFF 95
Query: 237 LQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADL 389
LQKR LS KPE +++ED +EL+ ELQRK+ L+++H K+ WQ +L D+
Sbjct: 96 LQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDI 146
>AF317680-1|AAK11563.1| 193|Homo sapiens tumor-related protein
protein.
Length = 193
Score = 90.6 bits (215), Expect = 4e-18
Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Frame = +3
Query: 69 APSNGSGNLVEEFEESFQACLNVLTKQE----ASPCAXXXXXXXXXXRFIDLARQMEAFF 236
AP S LV+E E SF+AC L Q+ +F+D+ARQ E FF
Sbjct: 36 APRPSSSTLVDELESSFEACFASLVSQDYVNGTDQEEIRTGVDQCIQKFLDIARQTECFF 95
Query: 237 LQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADL 389
LQKR LS KPE +++ED +EL+ ELQRK+ L+++H K+ WQ +L D+
Sbjct: 96 LQKRLQLSVQKPEQVIKEDVSELRNELQRKDALVQKHLTKLRHWQQVLEDI 146
>AK091549-1|BAC03690.1| 623|Homo sapiens protein ( Homo sapiens
cDNA FLJ34230 fis, clone FCBBF3025737, highly similar to
CARNITINE DEFICIENCY-ASSOCIATED PROTEIN EXPRESSED IN
VENTRICLE ).
Length = 623
Score = 30.3 bits (65), Expect = 6.0
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +3
Query: 300 ELKCE---LQRKEELLRRHYDKITQWQSLLADLQGHTGYN 410
ELK E LQR EELL++ ++ I Q + + +G +GY+
Sbjct: 389 ELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISGYS 428
>AF332010-1|AAO32947.1| 676|Homo sapiens CDV-1R variant b protein.
Length = 676
Score = 30.3 bits (65), Expect = 6.0
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +3
Query: 300 ELKCE---LQRKEELLRRHYDKITQWQSLLADLQGHTGYN 410
ELK E LQR EELL++ ++ I Q + + +G +GY+
Sbjct: 420 ELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISGYS 459
>AF250326-1|AAL50343.1| 676|Homo sapiens CDV-1R protein.
Length = 676
Score = 30.3 bits (65), Expect = 6.0
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +3
Query: 300 ELKCE---LQRKEELLRRHYDKITQWQSLLADLQGHTGYN 410
ELK E LQR EELL++ ++ I Q + + +G +GY+
Sbjct: 420 ELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISGYS 459
>AF139540-1|AAP97269.1| 676|Homo sapiens CDV protein protein.
Length = 676
Score = 30.3 bits (65), Expect = 6.0
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +3
Query: 300 ELKCE---LQRKEELLRRHYDKITQWQSLLADLQGHTGYN 410
ELK E LQR EELL++ ++ I Q + + +G +GY+
Sbjct: 420 ELKAEFGLLQRTEELLKQRHENIQQQLQTMEEKKGISGYS 459
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,518,397
Number of Sequences: 237096
Number of extensions: 1144438
Number of successful extensions: 3449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3445
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7028963750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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