Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0444
         (638 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118876-1|AAM50736.1|  189|Drosophila melanogaster GM31575p pro...   122   5e-28
AE014297-3803|AAF56470.1|  189|Drosophila melanogaster CG5121-PA...   122   5e-28
M24441-1|AAA28652.1|  975|Drosophila melanogaster protein ( D.me...    28   9.3  
AY094959-1|AAM11312.1|  975|Drosophila melanogaster SD02406p pro...    28   9.3  
AE013599-2234|AAF58029.1|  975|Drosophila melanogaster CG7765-PA...    28   9.3  

>AY118876-1|AAM50736.1|  189|Drosophila melanogaster GM31575p
           protein.
          Length = 189

 Score =  122 bits (293), Expect = 5e-28
 Identities = 56/114 (49%), Positives = 83/114 (72%), Gaps = 4/114 (3%)
 Frame = +3

Query: 63  MAAPSNGSGNLVEEFEESFQACLNVLTKQEASPCAXXXXXXXXXX----RFIDLARQMEA 230
           MA+  +G GNL++EFEE+FQ+CL  LTKQE +                 RFID+ARQMEA
Sbjct: 1   MASNESGGGNLMDEFEEAFQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNRFIDVARQMEA 60

Query: 231 FFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
           FFLQKRFL+S +KP +L++++N +L  E+QRKE LL++HY+++ +W++ L+D+Q
Sbjct: 61  FFLQKRFLVSTLKPYMLIKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114


>AE014297-3803|AAF56470.1|  189|Drosophila melanogaster CG5121-PA
           protein.
          Length = 189

 Score =  122 bits (293), Expect = 5e-28
 Identities = 56/114 (49%), Positives = 83/114 (72%), Gaps = 4/114 (3%)
 Frame = +3

Query: 63  MAAPSNGSGNLVEEFEESFQACLNVLTKQEASPCAXXXXXXXXXX----RFIDLARQMEA 230
           MA+  +G GNL++EFEE+FQ+CL  LTKQE +                 RFID+ARQMEA
Sbjct: 1   MASNESGGGNLMDEFEEAFQSCLLTLTKQEPNSGTNKEEIDLEVQKTTNRFIDVARQMEA 60

Query: 231 FFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
           FFLQKRFL+S +KP +L++++N +L  E+QRKE LL++HY+++ +W++ L+D+Q
Sbjct: 61  FFLQKRFLVSTLKPYMLIKDENQDLSIEIQRKEALLQKHYNRLEEWKACLSDIQ 114


>M24441-1|AAA28652.1|  975|Drosophila melanogaster protein (
            D.melanogaster kinesinheavy chain mRNA, complete cds. ).
          Length = 975

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 210  LARQMEAFFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLAD 386
            LA++ +  FL+          + LVR DN +L+CEL + E+ LR   +++   ++ L +
Sbjct: 848  LAQKQKISFLENNLDQLTKVHKQLVR-DNADLRCELPKLEKRLRCTMERVKALETALKE 905


>AY094959-1|AAM11312.1|  975|Drosophila melanogaster SD02406p protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 210  LARQMEAFFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLAD 386
            LA++ +  FL+          + LVR DN +L+CEL + E+ LR   +++   ++ L +
Sbjct: 848  LAQKQKISFLENNLDQLTKVHKQLVR-DNADLRCELPKLEKRLRCTMERVKALETALKE 905


>AE013599-2234|AAF58029.1|  975|Drosophila melanogaster CG7765-PA
            protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 210  LARQMEAFFLQKRFLLSAMKPELLVREDNNELKCELQRKEELLRRHYDKITQWQSLLAD 386
            LA++ +  FL+          + LVR DN +L+CEL + E+ LR   +++   ++ L +
Sbjct: 848  LAQKQKISFLENNLDQLTKVHKQLVR-DNADLRCELPKLEKRLRCTMERVKALETALKE 905


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,994,397
Number of Sequences: 53049
Number of extensions: 365491
Number of successful extensions: 1566
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1564
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2682985500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)