Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0444
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.       28   6.5  
U80453-4|AAK31441.2|  674|Caenorhabditis elegans Trehalase prote...    27   8.6  
AJ512339-1|CAD54512.1|  674|Caenorhabditis elegans trehalase pro...    27   8.6  

>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -1

Query: 245 FLQEECFHLSGEIDESFYLYFDFLLFGAW*SFLLRQHIQTSLKRFFK 105
           FL    F+ S     S + Y  F +F     FLL Q I+TS KR+F+
Sbjct: 26  FLSTHIFYSSAFYSFSSFCYSGFRIF----HFLLAQDIKTSAKRYFE 68


>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
 Frame = -1

Query: 296  IVLSDQEFRFHSG*KKSFL--QEECFHLSGEI-DESFYLYFDF------LLFGAW*SFLL 144
            + LS++EF      ++SFL   + C  ++     +S + YFD       LL G W   L 
Sbjct: 846  LCLSEEEFWKLRNFQRSFLFGMKICGPVTKHYCSQSSFQYFDMPLGCQILLSGIWLRDLT 905

Query: 143  RQHIQTSLKRFFKFFNQIAATIRRCRHFITHISFPWIKTTSS 18
                Q+ L + F    ++   I   R  +T++SFP + T  S
Sbjct: 906  NTTYQSHLNQAFSTVEEVHGPIVVFRTDLTNLSFPNLHTIRS 947


>Z81118-6|CAI46578.1| 1203|Caenorhabditis elegans Hypothetical protein
            T10G3.5b protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 285  REDNNELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
            +E+  +L+ E+Q KE  + R     TQ++++ AD+Q
Sbjct: 961  QEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQ 996


>Z81118-5|CAB03330.2| 1205|Caenorhabditis elegans Hypothetical protein
            T10G3.5a protein.
          Length = 1205

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 285  REDNNELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
            +E+  +L+ E+Q KE  + R     TQ++++ AD+Q
Sbjct: 963  QEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQ 998


>AY032860-1|AAK52089.1| 1205|Caenorhabditis elegans EEA1 protein.
          Length = 1205

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 285  REDNNELKCELQRKEELLRRHYDKITQWQSLLADLQ 392
            +E+  +L+ E+Q KE  + R     TQ++++ AD+Q
Sbjct: 963  QEELEKLQKEIQEKETTIARMTSSKTQFEAMFADVQ 998


>U80453-4|AAK31441.2|  674|Caenorhabditis elegans Trehalase protein
           5 protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 12  TVTGCCFYP-RKTYVSDKMAAPSNGSGNLVEEFEESFQACLNVLTKQEAS 158
           TV     YP  KT+V   M     G  +++E FE+ F   +  +TK++ +
Sbjct: 91  TVMAVQLYPDSKTFVDQPMKENQTGK-SIMEHFEKRFPVSIEKITKKDVA 139


>AJ512339-1|CAD54512.1|  674|Caenorhabditis elegans trehalase
           protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 12  TVTGCCFYP-RKTYVSDKMAAPSNGSGNLVEEFEESFQACLNVLTKQEAS 158
           TV     YP  KT+V   M     G  +++E FE+ F   +  +TK++ +
Sbjct: 91  TVMAVQLYPDSKTFVDQPMKENQTGK-SIMEHFEKRFPVSIEKITKKDVA 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,082,120
Number of Sequences: 27780
Number of extensions: 186939
Number of successful extensions: 666
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)