Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0444
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finge...    29   2.6  
At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finge...    29   2.6  
At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containi...    27   7.9  

>At2g47350.2 68415.m05910 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 374

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 122 SLSECVDEARSFTMRRKGGSQSRGRTI--HRSRQTDGSILPA 241
           SLS C+  A S     +G +  R R I     R T+G + PA
Sbjct: 62  SLSHCISRAESIAESERGNNDFRRREIINRNKRSTEGVLAPA 103


>At2g47350.1 68415.m05911 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 486

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 122 SLSECVDEARSFTMRRKGGSQSRGRTI--HRSRQTDGSILPA 241
           SLS C+  A S     +G +  R R I     R T+G + PA
Sbjct: 62  SLSHCISRAESIAESERGNNDFRRREIINRNKRSTEGVLAPA 103


>At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 836

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 196 STSTLTSSFSAHGEASCFVNTF 131
           S +T+ S+++AHG ASC V+ F
Sbjct: 672 SWNTMLSAYAAHGLASCAVSLF 693


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,480,210
Number of Sequences: 28952
Number of extensions: 172355
Number of successful extensions: 566
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)