Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0443
         (620 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    26   0.22 
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.3  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.3  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   8.3  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
 Frame = +3

Query: 396 LQHGGMTPAGLQHGENHSLELGLPPSGMTPAGLHHGGMTPGLGLDSGMTP---AGLVHGG 566
           +++GG+  A   H   H       P G        G   P +GL  G+ P    G   GG
Sbjct: 13  MRNGGVVSAEHPHQHQHYGAAVQVPQGGGAVQPDPGSCDPSVGLRQGIPPHHYGGPPSGG 72

Query: 567 LTPAGLHHGGMTP 605
             P G+ +    P
Sbjct: 73  QPPQGMPYPRFPP 85


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 459 PILRNGFRHVVTPPASFRHVADHLASATHALMKV-V*VPPVIM 334
           P L  G R    P  S RH+  HL + T  +  + + VPP +M
Sbjct: 322 PQLAGGGRRGPGPARSRRHLPAHLVAGTCFVQLIGMRVPPEMM 364


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 351 LTPPSLAHGSLTPGGLQHGGMTPA 422
           L+P + +   L  G L+HGG TP+
Sbjct: 299 LSPKTNSSPDLWNGKLKHGGPTPS 322


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 88  GGRKRKHEDHLPPPV 132
           GG ++K E ++PP V
Sbjct: 107 GGEEKKREFYIPPEV 121


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 468 EASPILRNGFRH 433
           E SP+L NG+ H
Sbjct: 96  EKSPLLANGYNH 107


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 126 PGTPAPQPVELEAPTPMP 179
           P TP P+P ++    P P
Sbjct: 250 PPTPKPRPTKVSRRKPRP 267


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 120 TAPGTPAPQPVELEAPT 170
           T P TP+P P E   P+
Sbjct: 96  TTPPTPSPPPEERLTPS 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,811
Number of Sequences: 336
Number of extensions: 4554
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)