Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0443
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 38 9e-04
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 31 0.13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.13
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 29 0.41
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 29 0.54
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.72
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 28 1.3
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 27 1.7
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 27 2.9
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.8
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 3.8
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 26 5.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 6.7
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 8.8
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 8.8
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 38.3 bits (85), Expect = 9e-04
Identities = 24/72 (33%), Positives = 32/72 (44%)
Frame = -2
Query: 607 PGVIPPWCKPAGVRPPCTKPAGVIPLSKPNPGVIPP*CKPAGVIPLGGKPNSKEWFSPCC 428
P PP KP+ PP P+G P+ KP+ PP P+G P+ P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAA-PPVPAPSGAPPV---PKPSVAAPPVP 1172
Query: 427 NPAGVIPPCCRP 392
P+ IPP +P
Sbjct: 1173 APSSGIPPVPKP 1184
Score = 37.9 bits (84), Expect = 0.001
Identities = 29/83 (34%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Frame = -2
Query: 610 PPGVIPPWCKPAGVRPPCTKPAGVIPLSKPNPGVIPP*CKPAGVIPLGGKPNSKEWFSPC 431
P IPP KPA PP P+ P+ KP+ GV PP P+ P+ P P
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV-PPVPPPSTAPPV---PTPSAGLPPV 1229
Query: 430 CNPAGVIPPCCRP----PGVSDP 374
P PP P P VS P
Sbjct: 1230 PVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/74 (33%), Positives = 31/74 (41%)
Frame = -2
Query: 607 PGVIPPWCKPAGVRPPCTKPAGVIPLSKPNPGVIPP*CKPAGVIPLGGKPNSKEWFSPCC 428
P IPP KP+ PP KP+ +P P P PP KP+ P P+ P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVP-PVPAPSGAPPVPKPSVAAPPVPVPSGA---PPVP 1143
Query: 427 NPAGVIPPCCRPPG 386
P+ PP P G
Sbjct: 1144 KPSVAAPPVPAPSG 1157
Score = 36.3 bits (80), Expect = 0.004
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = -2
Query: 607 PGVIPPWCKPAGVRPPCTKPAGVIPLSKPN---PGV------IPP*CKPAGVIPLGGKPN 455
P PP KP+ PP P+G P+ KP+ P V IPP KPA +P P+
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPS 1195
Query: 454 SKEWFSPCCNPAGVIPPCCRPPGVSDP 374
P P+ +PP PP + P
Sbjct: 1196 EA---PPVPKPSVGVPP-VPPPSTAPP 1218
Score = 35.9 bits (79), Expect = 0.005
Identities = 25/79 (31%), Positives = 34/79 (43%)
Frame = -2
Query: 610 PPGVIPPWCKPAGVRPPCTKPAGVIPLSKPNPGVIPP*CKPAGVIPLGGKPNSKEWFSPC 431
P PP KP+ PP P+G P+ KP+ PP P+G P+ P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAA-PPVPVPSGAPPV---PKPSVAAPPV 1152
Query: 430 CNPAGVIPPCCRPPGVSDP 374
P+G PP +P + P
Sbjct: 1153 PAPSGA-PPVPKPSVAAPP 1170
Score = 34.7 bits (76), Expect = 0.011
Identities = 24/79 (30%), Positives = 33/79 (41%)
Frame = -2
Query: 610 PPGVIPPWCKPAGVRPPCTKPAGVIPLSKPNPGVIPP*CKPAGVIPLGGKPNSKEWFSPC 431
P PP P+ PP KPA +P P P PP KP+ +P P++ P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVP-PVPPPSEAPPVPKPSVGVPPVPPPSTA---PPV 1219
Query: 430 CNPAGVIPPCCRPPGVSDP 374
P+ +PP P + P
Sbjct: 1220 PTPSAGLPPVPVPTAKAPP 1238
Score = 33.9 bits (74), Expect = 0.019
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = -2
Query: 607 PGVIPPWCKPAGVRPPCTKPAGVIPLSKPNPGV-IPP*CKPAGVIPLGGKPNSKEWFSPC 431
P PP P+G+ PP KP+ P P P V +PP P+G P+ P P
Sbjct: 1079 PSGAPPVPAPSGI-PPVPKPSVAAP-PVPKPSVAVPPVPAPSGAPPV---PKPSVAAPPV 1133
Query: 430 CNPAGVIPPCCRPPGVSDPCANEGG 356
P+G PP +P + P G
Sbjct: 1134 PVPSGA-PPVPKPSVAAPPVPAPSG 1157
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +3
Query: 135 PAPQPVELEAPTPMPHEYEPSVETSEGAFAQTPRPDLDVDPPQTPGG 275
P P+P P P P P V GA P+P + P P G
Sbjct: 1093 PVPKPSVAAPPVPKPSVAVPPVPAPSGA-PPVPKPSVAAPPVPVPSG 1138
Score = 28.3 bits (60), Expect = 0.95
Identities = 15/51 (29%), Positives = 19/51 (37%)
Frame = +3
Query: 135 PAPQPVELEAPTPMPHEYEPSVETSEGAFAQTPRPDLDVDPPQTPGGIMSS 287
P P P P P P PSV T + P P + P T + S+
Sbjct: 1228 PVPVPTAKAPPVPAPSSEAPSVSTPR---SSVPSPHSNASPSPTSSSMASA 1275
Score = 26.6 bits (56), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 303 ESTDPRTTLCHLESAEGLHRDLDAVFARTLPRSS 202
+S+ RT+L H +S + LHR L +R + S
Sbjct: 1317 DSSSTRTSLAHQDSRKSLHRHLSRSSSRASKKPS 1350
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 31.1 bits (67), Expect = 0.13
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -2
Query: 580 PAGVRPPCTKPAGVIPLSKPNPGVIPP*CKPAGVIPLGGKPNSKEWFSPCCNPA 419
PA P +P + P+ PN +PP P +P G PN+ SP PA
Sbjct: 227 PAVNHPMAGQPIAIAPVPAPNQAALPP--IPPQALPANGTPNTLA--SPVTLPA 276
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.13
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = -2
Query: 565 PPCTKPAGVIPLSKPNPGVIPP*CKPAGVIPLGGKPNSKEWFSPCCNPAGVIPPCCRPPG 386
PP PA ++P P P +PP PA + +GG P P AG PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPP---PAPI--MGGPPPPPP--PPGVAGAGPPPPPPPPPA 784
Query: 385 VS 380
VS
Sbjct: 785 VS 786
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = -2
Query: 610 PPGVIPPWCKPAGVR-PPCTKPAGVIPLSKPNPGVI----PP*CKPAGVIPLGG 464
PP VI P PA + PP G P P PGV PP P + GG
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.41
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 126 PGTPAPQPVELEAPTPMPHEYEPSVETSE 212
P P PQP E P P +PSV + E
Sbjct: 323 PAKPVPQPSSNEPPAPSAENKQPSVSSPE 351
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.1 bits (62), Expect = 0.54
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -2
Query: 607 PGVIPPWCKPAGVRPPCTKPAGVIPLSKPNPGV-IP-P*CKPAGVIPLGGKPNS 452
P PP P PP PAG +S NPG+ P P +PL PN+
Sbjct: 1891 PKAGPPSAAPTSALPPAGPPAGATAIS-GNPGMPAPVPLTGKETAVPLSSMPNA 1943
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 28.7 bits (61), Expect = 0.72
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = +3
Query: 123 APGTPAPQPVELEAPTPMP--HEYEPSVETSEGAFAQTPRPDLDVDPPQTP 269
AP TPAP P P P P PS+ + A + P V P++P
Sbjct: 730 APPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMNYVSQPESP 780
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 135 PAPQPVELEAPTPMPHEYEPSVETSEGAFA 224
PA QPVE P P+P + + SVE G+ A
Sbjct: 52 PAAQPVESSVPLPLP-KRKSSVEKRAGSVA 80
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 27.5 bits (58), Expect = 1.7
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Frame = +3
Query: 360 PSLAHGSLTPGGLQHGGMTPAG--LQHGENHSLELGLPPSGMTPAGLHHGGMTPGLGLDS 533
PSL G+ + M + HG N L P S P +T L LD
Sbjct: 41 PSLLSGTSPTSSFFNSSMISSNYTFPHGSNKQASLESPVSYSNPIP----SLT-WLSLD- 94
Query: 534 GMTPAGLVHGGLTPAGLHHGGMTPGG 611
G +P LV P+ HHG P G
Sbjct: 95 GDSPDSLVSTPTAPSANHHGNPFPNG 120
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 212 GSVRANTASRSRCRPSADSRWHNVVLGSVDSG 307
G NTA+ SRC A RW + S SG
Sbjct: 172 GLTSVNTAAYSRCDKDAKRRWATELADSNSSG 203
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 604 GVIPPWCKPAGVRPPC-TKPAGVIPLSKPN 518
G +P W +P G +PP T P + ++ N
Sbjct: 41 GTLPEWLRPPGWQPPVNTGPTSPVSINASN 70
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 28 RSEAEEEAKSPDPEPSVVRRGGRKRKHEDHLPPPVHQRLSPSN 156
RS+ ++ + P+PS R H PPPV Q LS N
Sbjct: 244 RSKVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVN 286
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 132 TPAPQPVELEAP-TPMPHEYEPSVETSEGAFAQTPRPDLDVDPPQ 263
TPAP P + AP +P E ++E AQ + ++ PQ
Sbjct: 125 TPAPAPAQTSAPAAALPDEPPKALEVLHTLVAQKLKKSIEEVSPQ 169
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +3
Query: 120 TAPGTPAPQPVELEAPTPMPHEYEPSVETSEGAFAQTPRPDLDVDPPQTPGGI 278
+ P P P + AP +P PS+ GA A P P P P G+
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSLPM--GAPAAPPLPPSAPIAPPLPAGM 463
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 8.8
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +2
Query: 47 RPSHQTLNPAL*DEADVNVNMKIIYRPRYTSASARRTRGTHSNAARI*TFSRDERGSVRA 226
+P+ +L+P D+ K+I +PR SAS N + FS E A
Sbjct: 119 KPTSVSLSPT-----DLQAQSKLIEKPRRRSASNATGSLNKKNQDPLRRFSISESAGAAA 173
Query: 227 NTASRSRCR-PSADSR 271
T S S + P +++R
Sbjct: 174 PTPSPSNSKSPPSENR 189
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = +3
Query: 123 APGTPAPQPVELEAPTPMPHEYEPSVETSEGAFAQTPRPDLDVDPPQ 263
+P A P + P E +V+TSE + TP DP Q
Sbjct: 70 SPSKKATSPKKATPAAVAPVEATSAVDTSEAVASMTPNKRKARDPAQ 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,712
Number of Sequences: 5004
Number of extensions: 61460
Number of successful extensions: 226
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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